Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0730 and Shew_0731 are separated by 8 nucleotides Shew_0731 and Shew_0732 are separated by 282 nucleotides Shew_0732 and Shew_0733 are separated by 30 nucleotides
Shew_0730: Shew_0730 - protein of unknown function DUF395, YeeE/YedE (RefSeq), at 832,089 to 832,517
_0730
Shew_0731: Shew_0731 - protein of unknown function DUF395, YeeE/YedE (RefSeq), at 832,526 to 832,996
_0731
Shew_0732: Shew_0732 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 833,279 to 834,619
_0732
Shew_0733: Shew_0733 - hypothetical protein (RefSeq), at 834,650 to 835,405
_0733
Position (kb) 833
834
835 Strain fitness (log2 ratio) -1
0
1 at 832.467 kb on + strand, within Shew_0730 at 832.636 kb on + strand, within Shew_0731 at 832.724 kb on - strand, within Shew_0731 at 832.825 kb on - strand, within Shew_0731 at 833.142 kb on + strand at 833.469 kb on - strand, within Shew_0732 at 833.485 kb on + strand, within Shew_0732 at 833.485 kb on + strand, within Shew_0732 at 833.776 kb on + strand, within Shew_0732 at 833.894 kb on - strand, within Shew_0732 at 834.052 kb on + strand, within Shew_0732 at 834.209 kb on - strand, within Shew_0732 at 834.209 kb on - strand, within Shew_0732 at 834.727 kb on - strand, within Shew_0733 at 834.786 kb on + strand, within Shew_0733 at 834.786 kb on + strand, within Shew_0733 at 834.794 kb on - strand, within Shew_0733 at 834.794 kb on - strand, within Shew_0733 at 835.380 kb on + strand at 835.542 kb on + strand at 835.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 832,467 + Shew_0730 0.88 +0.2 832,636 + Shew_0731 0.23 -1.6 832,724 - Shew_0731 0.42 +0.3 832,825 - Shew_0731 0.63 +0.8 833,142 + -0.7 833,469 - Shew_0732 0.14 +1.2 833,485 + Shew_0732 0.15 +0.3 833,485 + Shew_0732 0.15 +0.5 833,776 + Shew_0732 0.37 +1.2 833,894 - Shew_0732 0.46 -0.3 834,052 + Shew_0732 0.58 +0.3 834,209 - Shew_0732 0.69 -1.4 834,209 - Shew_0732 0.69 +0.5 834,727 - Shew_0733 0.10 +0.0 834,786 + Shew_0733 0.18 +0.2 834,786 + Shew_0733 0.18 -0.6 834,794 - Shew_0733 0.19 +0.7 834,794 - Shew_0733 0.19 +0.6 835,380 + +0.3 835,542 + +0.4 835,550 - -0.0
Or see this region's nucleotide sequence