Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0659 and Shew_0660 overlap by 4 nucleotides Shew_0660 and Shew_0661 are separated by 70 nucleotides Shew_0661 and Shew_0662 are separated by 234 nucleotides
Shew_0659: Shew_0659 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 749,321 to 750,751
_0659
Shew_0660: Shew_0660 - hypothetical protein (RefSeq), at 750,748 to 751,584
_0660
Shew_0661: Shew_0661 - hypothetical protein (RefSeq), at 751,655 to 751,969
_0661
Shew_0662: Shew_0662 - NAD(P) transhydrogenase, beta subunit (RefSeq), at 752,204 to 753,586
_0662
Position (kb) 751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 750.811 kb on + strand at 750.819 kb on - strand at 751.026 kb on + strand, within Shew_0660 at 751.034 kb on - strand, within Shew_0660 at 751.178 kb on + strand, within Shew_0660 at 751.185 kb on + strand, within Shew_0660 at 751.238 kb on + strand, within Shew_0660 at 751.246 kb on - strand, within Shew_0660 at 751.246 kb on - strand, within Shew_0660 at 751.246 kb on - strand, within Shew_0660 at 751.370 kb on + strand, within Shew_0660 at 751.524 kb on + strand at 751.864 kb on - strand, within Shew_0661 at 752.282 kb on - strand at 752.481 kb on + strand, within Shew_0662 at 752.585 kb on - strand, within Shew_0662 at 752.882 kb on + strand, within Shew_0662
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 750,811 + +0.9 750,819 - +0.3 751,026 + Shew_0660 0.33 +0.7 751,034 - Shew_0660 0.34 -0.4 751,178 + Shew_0660 0.51 +0.4 751,185 + Shew_0660 0.52 -3.0 751,238 + Shew_0660 0.59 -0.6 751,246 - Shew_0660 0.59 +0.4 751,246 - Shew_0660 0.59 +0.0 751,246 - Shew_0660 0.59 +0.3 751,370 + Shew_0660 0.74 -1.0 751,524 + -0.0 751,864 - Shew_0661 0.66 -1.0 752,282 - -0.3 752,481 + Shew_0662 0.20 -0.8 752,585 - Shew_0662 0.28 -0.0 752,882 + Shew_0662 0.49 +0.0
Or see this region's nucleotide sequence