Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0389 and Shew_0390 are separated by 4 nucleotides Shew_0390 and Shew_0391 overlap by 4 nucleotides Shew_0391 and Shew_0392 overlap by 4 nucleotides
Shew_0389: Shew_0389 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 438,699 to 440,390
_0389
Shew_0390: Shew_0390 - MSHA biogenesis protein MshM (RefSeq), at 440,395 to 441,300
_0390
Shew_0391: Shew_0391 - TPR repeat-containing protein (RefSeq), at 441,297 to 442,457
_0391
Shew_0392: Shew_0392 - type II secretion system protein E (RefSeq), at 442,454 to 444,214
_0392
Position (kb) 441
442
443 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 440.342 kb on + strand at 440.846 kb on - strand, within Shew_0390 at 441.247 kb on + strand at 441.413 kb on - strand, within Shew_0391 at 441.463 kb on - strand, within Shew_0391 at 441.751 kb on - strand, within Shew_0391 at 441.763 kb on - strand, within Shew_0391 at 441.768 kb on + strand, within Shew_0391 at 441.773 kb on + strand, within Shew_0391 at 441.832 kb on - strand, within Shew_0391 at 441.941 kb on + strand, within Shew_0391 at 442.038 kb on - strand, within Shew_0391 at 442.049 kb on + strand, within Shew_0391 at 442.049 kb on + strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.385 kb on - strand at 442.703 kb on + strand, within Shew_0392 at 442.834 kb on - strand, within Shew_0392 at 442.880 kb on + strand, within Shew_0392 at 443.010 kb on - strand, within Shew_0392 at 443.258 kb on - strand, within Shew_0392 at 443.349 kb on - strand, within Shew_0392
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 440,342 + +2.1 440,846 - Shew_0390 0.50 +2.6 441,247 + +1.3 441,413 - Shew_0391 0.10 +2.7 441,463 - Shew_0391 0.14 +1.8 441,751 - Shew_0391 0.39 +2.5 441,763 - Shew_0391 0.40 +2.6 441,768 + Shew_0391 0.41 +2.6 441,773 + Shew_0391 0.41 +1.5 441,832 - Shew_0391 0.46 +2.8 441,941 + Shew_0391 0.55 +1.7 442,038 - Shew_0391 0.64 +1.4 442,049 + Shew_0391 0.65 +0.1 442,049 + Shew_0391 0.65 +1.9 442,057 - Shew_0391 0.65 +2.6 442,057 - Shew_0391 0.65 +2.8 442,057 - Shew_0391 0.65 +2.3 442,057 - Shew_0391 0.65 +2.3 442,057 - Shew_0391 0.65 +1.4 442,057 - Shew_0391 0.65 +3.0 442,057 - Shew_0391 0.65 +2.6 442,057 - Shew_0391 0.65 +2.8 442,385 - +4.1 442,703 + Shew_0392 0.14 +2.7 442,834 - Shew_0392 0.22 +2.6 442,880 + Shew_0392 0.24 +2.1 443,010 - Shew_0392 0.32 +2.7 443,258 - Shew_0392 0.46 +2.9 443,349 - Shew_0392 0.51 +2.1
Or see this region's nucleotide sequence