Strain Fitness in Shewanella loihica PV-4 around Shew_0236

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0235 and Shew_0236 are separated by 117 nucleotidesShew_0236 and Shew_0237 are separated by 10 nucleotides Shew_0235: Shew_0235 - isochorismatase hydrolase (RefSeq), at 250,449 to 251,399 _0235 Shew_0236: Shew_0236 - LysR family transcriptional regulator (RefSeq), at 251,517 to 252,434 _0236 Shew_0237: Shew_0237 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 252,445 to 254,343 _0237 Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1at 250.659 kb on + strand, within Shew_0235at 250.659 kb on + strand, within Shew_0235at 250.662 kb on - strand, within Shew_0235at 250.667 kb on - strand, within Shew_0235at 250.667 kb on - strand, within Shew_0235at 250.936 kb on + strand, within Shew_0235at 251.742 kb on + strand, within Shew_0236at 251.760 kb on - strand, within Shew_0236at 252.100 kb on + strand, within Shew_0236at 252.182 kb on + strand, within Shew_0236at 252.243 kb on - strand, within Shew_0236at 252.691 kb on + strand, within Shew_0237at 252.702 kb on + strand, within Shew_0237at 252.987 kb on + strand, within Shew_0237at 253.048 kb on - strand, within Shew_0237at 253.053 kb on - strand, within Shew_0237at 253.224 kb on - strand, within Shew_0237at 253.396 kb on - strand, within Shew_0237at 253.396 kb on - strand, within Shew_0237at 253.396 kb on - strand, within Shew_0237at 253.413 kb on - strand, within Shew_0237

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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250,659 + Shew_0235 0.22 -0.1
250,659 + Shew_0235 0.22 +0.3
250,662 - Shew_0235 0.22 +0.2
250,667 - Shew_0235 0.23 +0.8
250,667 - Shew_0235 0.23 -0.6
250,936 + Shew_0235 0.51 -0.3
251,742 + Shew_0236 0.25 -0.2
251,760 - Shew_0236 0.26 -0.3
252,100 + Shew_0236 0.64 +1.1
252,182 + Shew_0236 0.72 -0.7
252,243 - Shew_0236 0.79 -2.1
252,691 + Shew_0237 0.13 -1.6
252,702 + Shew_0237 0.14 +0.2
252,987 + Shew_0237 0.29 +1.6
253,048 - Shew_0237 0.32 +0.0
253,053 - Shew_0237 0.32 -0.3
253,224 - Shew_0237 0.41 +1.2
253,396 - Shew_0237 0.50 +1.1
253,396 - Shew_0237 0.50 +0.5
253,396 - Shew_0237 0.50 -0.3
253,413 - Shew_0237 0.51 -0.5

Or see this region's nucleotide sequence