Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0061 and Shew_0062 are separated by 491 nucleotides Shew_0062 and Shew_0063 are separated by 17 nucleotides
Shew_0061: Shew_0061 - formate dehydrogenase, gamma subunit (RefSeq), at 73,390 to 74,397
_0061
Shew_0062: Shew_0062 - hypothetical protein (RefSeq), at 74,889 to 75,086
_0062
Shew_0063: Shew_0063 - molybdopterin oxidoreductase (RefSeq), at 75,104 to 77,959
_0063
Position (kb) 74
75
76 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 73.988 kb on + strand, within Shew_0061 at 73.996 kb on - strand, within Shew_0061 at 74.048 kb on - strand, within Shew_0061 at 74.119 kb on - strand, within Shew_0061 at 74.119 kb on - strand, within Shew_0061 at 74.130 kb on + strand, within Shew_0061 at 74.295 kb on - strand, within Shew_0061 at 74.330 kb on - strand at 74.330 kb on - strand at 74.332 kb on + strand at 74.332 kb on + strand at 74.332 kb on + strand at 74.340 kb on - strand at 74.340 kb on - strand at 74.399 kb on - strand at 74.642 kb on + strand at 74.653 kb on + strand at 74.653 kb on + strand at 74.661 kb on - strand at 74.661 kb on - strand at 75.419 kb on - strand, within Shew_0063 at 75.712 kb on + strand, within Shew_0063 at 75.718 kb on + strand, within Shew_0063 at 75.726 kb on - strand, within Shew_0063 at 75.726 kb on - strand, within Shew_0063 at 75.897 kb on + strand, within Shew_0063 at 75.905 kb on - strand, within Shew_0063 at 75.909 kb on + strand, within Shew_0063 at 75.910 kb on - strand, within Shew_0063 at 76.063 kb on - strand, within Shew_0063 at 76.072 kb on + strand, within Shew_0063 at 76.086 kb on + strand, within Shew_0063
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 73,988 + Shew_0061 0.59 +0.8 73,996 - Shew_0061 0.60 +0.7 74,048 - Shew_0061 0.65 +0.7 74,119 - Shew_0061 0.72 +1.7 74,119 - Shew_0061 0.72 +0.4 74,130 + Shew_0061 0.73 +0.6 74,295 - Shew_0061 0.90 +0.6 74,330 - -2.2 74,330 - +0.5 74,332 + -2.2 74,332 + +0.2 74,332 + -1.9 74,340 - +0.2 74,340 - +0.0 74,399 - +1.6 74,642 + +0.6 74,653 + +3.2 74,653 + +0.1 74,661 - +0.8 74,661 - -0.3 75,419 - Shew_0063 0.11 +0.6 75,712 + Shew_0063 0.21 -0.5 75,718 + Shew_0063 0.21 -0.6 75,726 - Shew_0063 0.22 +2.7 75,726 - Shew_0063 0.22 -0.5 75,897 + Shew_0063 0.28 -2.6 75,905 - Shew_0063 0.28 -4.9 75,909 + Shew_0063 0.28 -0.3 75,910 - Shew_0063 0.28 -0.8 76,063 - Shew_0063 0.34 -0.1 76,072 + Shew_0063 0.34 -0.3 76,086 + Shew_0063 0.34 -0.4
Or see this region's nucleotide sequence