Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0034 and Shew_0035 are separated by 203 nucleotides Shew_0035 and Shew_0036 are separated by 89 nucleotides
Shew_0034: Shew_0034 - methyltransferase type 12 (RefSeq), at 39,701 to 40,504
_0034
Shew_0035: Shew_0035 - putative lipoprotein (RefSeq), at 40,708 to 41,478
_0035
Shew_0036: Shew_0036 - phosphoesterase, PA-phosphatase related (RefSeq), at 41,568 to 42,389
_0036
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.137 kb on + strand, within Shew_0034 at 40.145 kb on - strand, within Shew_0034 at 40.320 kb on + strand, within Shew_0034 at 40.699 kb on - strand at 40.779 kb on - strand at 40.904 kb on - strand, within Shew_0035 at 40.906 kb on + strand, within Shew_0035 at 40.976 kb on - strand, within Shew_0035 at 41.186 kb on + strand, within Shew_0035 at 41.253 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.335 kb on - strand, within Shew_0035 at 41.344 kb on + strand, within Shew_0035 at 41.349 kb on + strand, within Shew_0035 at 41.407 kb on - strand at 41.479 kb on + strand at 41.549 kb on + strand at 41.565 kb on + strand at 41.611 kb on - strand at 41.808 kb on + strand, within Shew_0036 at 41.840 kb on + strand, within Shew_0036 at 41.908 kb on + strand, within Shew_0036 at 42.161 kb on + strand, within Shew_0036 at 42.218 kb on + strand, within Shew_0036 at 42.279 kb on + strand, within Shew_0036 at 42.372 kb on - strand at 42.462 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 40,137 + Shew_0034 0.54 -0.1 40,145 - Shew_0034 0.55 -0.0 40,320 + Shew_0034 0.77 -1.8 40,699 - +0.6 40,779 - -0.3 40,904 - Shew_0035 0.25 +1.6 40,906 + Shew_0035 0.26 -0.1 40,976 - Shew_0035 0.35 -1.1 41,186 + Shew_0035 0.62 -0.8 41,253 + Shew_0035 0.71 -0.2 41,334 + Shew_0035 0.81 -0.7 41,334 + Shew_0035 0.81 -0.6 41,334 + Shew_0035 0.81 +0.5 41,335 - Shew_0035 0.81 +0.1 41,344 + Shew_0035 0.82 -0.3 41,349 + Shew_0035 0.83 -0.0 41,407 - +0.8 41,479 + +0.0 41,549 + -0.0 41,565 + -0.2 41,611 - +0.0 41,808 + Shew_0036 0.29 +2.4 41,840 + Shew_0036 0.33 -0.2 41,908 + Shew_0036 0.41 +0.2 42,161 + Shew_0036 0.72 +0.1 42,218 + Shew_0036 0.79 -0.8 42,279 + Shew_0036 0.86 -1.0 42,372 - +0.1 42,462 + -0.1
Or see this region's nucleotide sequence