Experiment: m.b. Sisomicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1785 and Dshi_1786 are separated by 692 nucleotides Dshi_1786 and Dshi_R0033 are separated by 164 nucleotides Dshi_R0033 and Dshi_1787 are separated by 52 nucleotides Dshi_1787 and Dshi_1788 overlap by 4 nucleotides
Dshi_1785: Dshi_1785 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (RefSeq), at 1,854,290 to 1,857,964
_1785
Dshi_1786: Dshi_1786 - hypothetical protein (RefSeq), at 1,858,657 to 1,859,097
_1786
Dshi_R0033: Dshi_R0033 - tRNA-Pro (RefSeq), at 1,859,262 to 1,859,338
_R0033
Dshi_1787: Dshi_1787 - protein of unknown function DUF192 (RefSeq), at 1,859,391 to 1,859,876
_1787
Dshi_1788: Dshi_1788 - cold-shock DNA-binding domain protein (RefSeq), at 1,859,873 to 1,860,394
_1788
Position (kb)
1858
1859
1860 Strain fitness (log2 ratio)
-1
0
1
2 at 1858.051 kb on - strand at 1858.065 kb on - strand at 1858.348 kb on + strand at 1858.356 kb on - strand at 1858.356 kb on - strand at 1858.356 kb on - strand at 1858.361 kb on - strand at 1858.361 kb on - strand at 1858.514 kb on + strand at 1858.536 kb on + strand at 1858.536 kb on + strand at 1858.544 kb on - strand at 1858.624 kb on + strand at 1858.659 kb on + strand at 1858.661 kb on + strand at 1858.661 kb on + strand at 1858.679 kb on - strand at 1858.785 kb on + strand, within Dshi_1786 at 1858.800 kb on + strand, within Dshi_1786 at 1858.813 kb on - strand, within Dshi_1786 at 1858.844 kb on + strand, within Dshi_1786 at 1858.863 kb on - strand, within Dshi_1786 at 1858.883 kb on + strand, within Dshi_1786 at 1858.883 kb on + strand, within Dshi_1786 at 1859.070 kb on + strand at 1859.115 kb on - strand at 1860.050 kb on + strand, within Dshi_1788 at 1860.086 kb on + strand, within Dshi_1788
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.002 mg/ml remove 1,858,051 - +0.1 1,858,065 - +1.0 1,858,348 + +0.6 1,858,356 - +0.6 1,858,356 - +0.4 1,858,356 - +0.3 1,858,361 - -1.3 1,858,361 - -0.6 1,858,514 + +1.1 1,858,536 + -0.7 1,858,536 + -0.4 1,858,544 - -1.6 1,858,624 + -0.2 1,858,659 + -0.3 1,858,661 + +0.3 1,858,661 + +0.2 1,858,679 - -0.8 1,858,785 + Dshi_1786 0.29 +0.6 1,858,800 + Dshi_1786 0.32 +0.5 1,858,813 - Dshi_1786 0.35 +2.1 1,858,844 + Dshi_1786 0.42 +0.1 1,858,863 - Dshi_1786 0.47 +0.3 1,858,883 + Dshi_1786 0.51 +0.2 1,858,883 + Dshi_1786 0.51 +0.1 1,859,070 + -0.4 1,859,115 - +0.0 1,860,050 + Dshi_1788 0.34 -0.6 1,860,086 + Dshi_1788 0.41 -0.6
Or see this region's nucleotide sequence