Experiment: m.b. Sisomicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0261 and Dshi_0262 are separated by 352 nucleotides Dshi_0262 and Dshi_0263 are separated by 127 nucleotides Dshi_0263 and Dshi_0264 are separated by 54 nucleotides
Dshi_0261: Dshi_0261 - ribosomal protein L1 (RefSeq), at 257,737 to 258,435
_0261
Dshi_0262: Dshi_0262 - hypothetical protein (RefSeq), at 258,788 to 259,516
_0262
Dshi_0263: Dshi_0263 - methyltransferase FkbM family (RefSeq), at 259,644 to 260,429
_0263
Dshi_0264: Dshi_0264 - hypothetical protein (RefSeq), at 260,484 to 261,542
_0264
Position (kb)
258
259
260 Strain fitness (log2 ratio)
-1
0
1
2 at 258.573 kb on + strand at 258.578 kb on + strand at 258.581 kb on - strand at 258.584 kb on - strand at 258.592 kb on - strand at 258.605 kb on + strand at 258.658 kb on - strand at 258.663 kb on + strand at 258.715 kb on - strand at 258.811 kb on + strand at 258.822 kb on + strand at 258.827 kb on + strand at 258.827 kb on + strand at 258.828 kb on + strand at 258.835 kb on - strand at 258.869 kb on + strand, within Dshi_0262 at 259.039 kb on + strand, within Dshi_0262 at 259.173 kb on + strand, within Dshi_0262 at 259.217 kb on + strand, within Dshi_0262 at 259.276 kb on + strand, within Dshi_0262 at 259.318 kb on - strand, within Dshi_0262 at 259.667 kb on + strand at 259.675 kb on - strand at 259.687 kb on + strand at 259.756 kb on - strand, within Dshi_0263 at 259.760 kb on + strand, within Dshi_0263 at 259.860 kb on - strand, within Dshi_0263 at 259.975 kb on + strand, within Dshi_0263 at 259.983 kb on - strand, within Dshi_0263 at 260.051 kb on + strand, within Dshi_0263 at 260.059 kb on - strand, within Dshi_0263 at 260.059 kb on - strand, within Dshi_0263 at 260.065 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.094 kb on - strand, within Dshi_0263 at 260.181 kb on + strand, within Dshi_0263 at 260.234 kb on + strand, within Dshi_0263 at 260.278 kb on + strand, within Dshi_0263 at 260.280 kb on - strand, within Dshi_0263 at 260.306 kb on + strand, within Dshi_0263 at 260.329 kb on - strand, within Dshi_0263 at 260.350 kb on + strand, within Dshi_0263 at 260.356 kb on - strand at 260.394 kb on + strand at 260.404 kb on - strand at 260.460 kb on - strand at 260.468 kb on + strand at 260.468 kb on + strand at 260.476 kb on - strand at 260.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.002 mg/ml remove 258,573 + +0.2 258,578 + +0.2 258,581 - +0.8 258,584 - -0.2 258,592 - +0.8 258,605 + +0.4 258,658 - -0.8 258,663 + +0.4 258,715 - +0.2 258,811 + -0.9 258,822 + +0.5 258,827 + -0.2 258,827 + +0.1 258,828 + -1.3 258,835 - +0.1 258,869 + Dshi_0262 0.11 -0.2 259,039 + Dshi_0262 0.34 -0.5 259,173 + Dshi_0262 0.53 +0.0 259,217 + Dshi_0262 0.59 -0.6 259,276 + Dshi_0262 0.67 -0.9 259,318 - Dshi_0262 0.73 -0.8 259,667 + -0.2 259,675 - -0.8 259,687 + +0.6 259,756 - Dshi_0263 0.14 +0.3 259,760 + Dshi_0263 0.15 +1.0 259,860 - Dshi_0263 0.27 +0.6 259,975 + Dshi_0263 0.42 +0.2 259,983 - Dshi_0263 0.43 -0.2 260,051 + Dshi_0263 0.52 +0.2 260,059 - Dshi_0263 0.53 -0.3 260,059 - Dshi_0263 0.53 +1.3 260,065 + Dshi_0263 0.54 -0.7 260,086 + Dshi_0263 0.56 +1.9 260,086 + Dshi_0263 0.56 -0.2 260,086 + Dshi_0263 0.56 -0.2 260,094 - Dshi_0263 0.57 +0.1 260,181 + Dshi_0263 0.68 +0.0 260,234 + Dshi_0263 0.75 -0.3 260,278 + Dshi_0263 0.81 +0.8 260,280 - Dshi_0263 0.81 +0.8 260,306 + Dshi_0263 0.84 -0.2 260,329 - Dshi_0263 0.87 -0.1 260,350 + Dshi_0263 0.90 +0.5 260,356 - +0.1 260,394 + -0.9 260,404 - +1.4 260,460 - +0.2 260,468 + -0.9 260,468 + +0.5 260,476 - -0.1 260,476 - -0.0
Or see this region's nucleotide sequence