Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0068

Experiment: m.b. Sisomicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0066 and Dshi_0067 overlap by 4 nucleotidesDshi_0067 and Dshi_0068 are separated by 4 nucleotidesDshi_0068 and Dshi_0069 are separated by 76 nucleotides Dshi_0066: Dshi_0066 - short-chain dehydrogenase/reductase SDR (RefSeq), at 67,584 to 68,342 _0066 Dshi_0067: Dshi_0067 - Enoyl-CoA hydratase/isomerase (RefSeq), at 68,339 to 69,085 _0067 Dshi_0068: Dshi_0068 - lipoprotein, putative (RefSeq), at 69,090 to 69,674 _0068 Dshi_0069: Dshi_0069 - Auxin Efflux Carrier (RefSeq), at 69,751 to 70,632 _0069 Position (kb) 69 70Strain fitness (log2 ratio) -2 -1 0 1at 68.208 kb on + strand, within Dshi_0066at 68.251 kb on - strand, within Dshi_0066at 68.393 kb on + strandat 68.398 kb on + strandat 68.533 kb on + strand, within Dshi_0067at 68.585 kb on + strand, within Dshi_0067at 68.594 kb on - strand, within Dshi_0067at 68.595 kb on + strand, within Dshi_0067at 68.600 kb on + strand, within Dshi_0067at 68.603 kb on - strand, within Dshi_0067at 68.603 kb on - strand, within Dshi_0067at 68.772 kb on - strand, within Dshi_0067at 68.935 kb on + strand, within Dshi_0067at 69.411 kb on - strand, within Dshi_0068at 69.776 kb on + strandat 69.810 kb on + strandat 69.813 kb on - strandat 69.825 kb on - strandat 69.855 kb on - strand, within Dshi_0069at 69.960 kb on - strand, within Dshi_0069at 70.010 kb on + strand, within Dshi_0069at 70.064 kb on + strand, within Dshi_0069at 70.157 kb on - strand, within Dshi_0069at 70.159 kb on + strand, within Dshi_0069at 70.262 kb on + strand, within Dshi_0069at 70.270 kb on - strand, within Dshi_0069at 70.414 kb on + strand, within Dshi_0069at 70.439 kb on - strand, within Dshi_0069at 70.441 kb on + strand, within Dshi_0069at 70.449 kb on - strand, within Dshi_0069at 70.478 kb on - strand, within Dshi_0069at 70.489 kb on - strand, within Dshi_0069at 70.507 kb on + strand, within Dshi_0069at 70.507 kb on + strand, within Dshi_0069at 70.539 kb on + strand, within Dshi_0069at 70.562 kb on - strandat 70.606 kb on + strandat 70.606 kb on + strandat 70.606 kb on + strandat 70.624 kb on - strandat 70.668 kb on + strandat 70.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.002 mg/ml
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68,208 + Dshi_0066 0.82 -1.0
68,251 - Dshi_0066 0.88 -0.7
68,393 + -0.3
68,398 + +0.1
68,533 + Dshi_0067 0.26 +0.2
68,585 + Dshi_0067 0.33 +1.1
68,594 - Dshi_0067 0.34 +1.6
68,595 + Dshi_0067 0.34 -0.6
68,600 + Dshi_0067 0.35 +0.7
68,603 - Dshi_0067 0.35 -0.2
68,603 - Dshi_0067 0.35 -0.4
68,772 - Dshi_0067 0.58 -0.5
68,935 + Dshi_0067 0.80 -0.1
69,411 - Dshi_0068 0.55 -1.6
69,776 + -2.2
69,810 + +0.6
69,813 - +0.6
69,825 - +0.7
69,855 - Dshi_0069 0.12 -0.0
69,960 - Dshi_0069 0.24 -1.3
70,010 + Dshi_0069 0.29 +0.0
70,064 + Dshi_0069 0.35 -0.2
70,157 - Dshi_0069 0.46 -0.5
70,159 + Dshi_0069 0.46 +0.5
70,262 + Dshi_0069 0.58 +0.4
70,270 - Dshi_0069 0.59 +0.1
70,414 + Dshi_0069 0.75 +0.6
70,439 - Dshi_0069 0.78 +0.6
70,441 + Dshi_0069 0.78 -0.1
70,449 - Dshi_0069 0.79 +0.7
70,478 - Dshi_0069 0.82 -0.7
70,489 - Dshi_0069 0.84 +0.6
70,507 + Dshi_0069 0.86 +0.4
70,507 + Dshi_0069 0.86 -0.3
70,539 + Dshi_0069 0.89 -1.7
70,562 - +0.1
70,606 + -0.5
70,606 + +0.4
70,606 + +0.3
70,624 - +0.1
70,668 + -0.4
70,671 - -0.2

Or see this region's nucleotide sequence