Experiment: MoYLS4 with DETA/NO 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trk1 and tme are separated by 118 nucleotides tme and pepA are separated by 57 nucleotides
DVU0413: trk1 - potassium uptake protein, TrkH family (TIGR), at 462,411 to 463,748
trk1
DVU0414: tme - NADP-dependent malic enzyme-related protein (TIGR), at 463,867 to 465,186
tme
DVU0415: pepA - cytosol aminopeptidase (TIGR), at 465,244 to 466,767
pepA
Position (kb) 463
464
465
466 Strain fitness (log2 ratio) -1
0
1
2 at 462.897 kb on - strand, within trk1 at 462.961 kb on + strand, within trk1 at 462.969 kb on - strand, within trk1 at 462.969 kb on - strand, within trk1 at 462.969 kb on - strand, within trk1 at 462.978 kb on - strand, within trk1 at 462.996 kb on + strand, within trk1 at 463.029 kb on + strand, within trk1 at 463.072 kb on - strand, within trk1 at 463.087 kb on - strand, within trk1 at 463.145 kb on + strand, within trk1 at 463.189 kb on - strand, within trk1 at 463.302 kb on + strand, within trk1 at 463.315 kb on + strand, within trk1 at 463.344 kb on - strand, within trk1 at 463.510 kb on + strand, within trk1 at 463.601 kb on + strand, within trk1 at 463.606 kb on + strand, within trk1 at 463.614 kb on - strand, within trk1 at 463.648 kb on + strand at 463.653 kb on + strand at 463.655 kb on + strand at 463.661 kb on - strand at 463.663 kb on - strand at 463.678 kb on - strand at 463.678 kb on - strand at 463.740 kb on - strand at 463.752 kb on + strand at 463.757 kb on + strand at 463.765 kb on - strand at 463.826 kb on - strand at 463.843 kb on + strand at 463.926 kb on + strand at 463.952 kb on + strand at 464.004 kb on - strand, within tme at 464.034 kb on + strand, within tme at 464.037 kb on - strand, within tme at 464.063 kb on - strand, within tme at 464.099 kb on + strand, within tme at 464.107 kb on - strand, within tme at 464.157 kb on + strand, within tme at 464.157 kb on + strand, within tme at 464.157 kb on + strand, within tme at 464.157 kb on + strand, within tme at 464.373 kb on - strand, within tme at 464.386 kb on - strand, within tme at 464.420 kb on - strand, within tme at 464.435 kb on - strand, within tme at 464.519 kb on - strand, within tme at 464.520 kb on - strand, within tme at 464.580 kb on - strand, within tme at 464.715 kb on - strand, within tme at 464.751 kb on + strand, within tme at 464.751 kb on + strand, within tme at 464.751 kb on + strand, within tme at 464.759 kb on - strand, within tme at 464.759 kb on - strand, within tme at 464.766 kb on - strand, within tme at 464.873 kb on - strand, within tme at 464.879 kb on + strand, within tme at 464.930 kb on - strand, within tme at 464.996 kb on - strand, within tme at 464.996 kb on - strand, within tme at 465.008 kb on + strand, within tme at 465.115 kb on - strand at 465.126 kb on + strand at 465.134 kb on - strand at 465.245 kb on - strand at 465.245 kb on - strand at 465.331 kb on - strand at 465.495 kb on + strand, within pepA at 465.604 kb on + strand, within pepA at 465.606 kb on + strand, within pepA at 465.644 kb on - strand, within pepA at 465.660 kb on + strand, within pepA at 465.663 kb on - strand, within pepA at 465.675 kb on + strand, within pepA at 465.683 kb on + strand, within pepA at 465.685 kb on + strand, within pepA at 465.746 kb on - strand, within pepA at 465.747 kb on - strand, within pepA at 465.765 kb on - strand, within pepA at 465.798 kb on + strand, within pepA at 465.940 kb on + strand, within pepA at 465.969 kb on - strand, within pepA at 466.085 kb on + strand, within pepA at 466.129 kb on + strand, within pepA
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DETA/NO 100uM remove 462,897 - trk1 DVU0413 0.36 -0.1 462,961 + trk1 DVU0413 0.41 -1.7 462,969 - trk1 DVU0413 0.42 -0.1 462,969 - trk1 DVU0413 0.42 -0.6 462,969 - trk1 DVU0413 0.42 -1.7 462,978 - trk1 DVU0413 0.42 +0.1 462,996 + trk1 DVU0413 0.44 -0.2 463,029 + trk1 DVU0413 0.46 -0.5 463,072 - trk1 DVU0413 0.49 +0.2 463,087 - trk1 DVU0413 0.51 -1.5 463,145 + trk1 DVU0413 0.55 -0.5 463,189 - trk1 DVU0413 0.58 +0.1 463,302 + trk1 DVU0413 0.67 +0.2 463,315 + trk1 DVU0413 0.68 -0.1 463,344 - trk1 DVU0413 0.70 -0.0 463,510 + trk1 DVU0413 0.82 -0.1 463,601 + trk1 DVU0413 0.89 -1.2 463,606 + trk1 DVU0413 0.89 -0.8 463,614 - trk1 DVU0413 0.90 -0.7 463,648 + +1.3 463,653 + -0.9 463,655 + -0.0 463,661 - +0.8 463,663 - +0.6 463,678 - -0.9 463,678 - -0.2 463,740 - +0.8 463,752 + -0.5 463,757 + -0.7 463,765 - +0.1 463,826 - +0.0 463,843 + +2.1 463,926 + +0.2 463,952 + +0.2 464,004 - tme DVU0414 0.10 +0.6 464,034 + tme DVU0414 0.13 -0.0 464,037 - tme DVU0414 0.13 +0.2 464,063 - tme DVU0414 0.15 +0.0 464,099 + tme DVU0414 0.18 -1.5 464,107 - tme DVU0414 0.18 +0.5 464,157 + tme DVU0414 0.22 +0.8 464,157 + tme DVU0414 0.22 +0.1 464,157 + tme DVU0414 0.22 -0.7 464,157 + tme DVU0414 0.22 +1.3 464,373 - tme DVU0414 0.38 +0.5 464,386 - tme DVU0414 0.39 +0.0 464,420 - tme DVU0414 0.42 -0.9 464,435 - tme DVU0414 0.43 +0.3 464,519 - tme DVU0414 0.49 -0.7 464,520 - tme DVU0414 0.49 -0.3 464,580 - tme DVU0414 0.54 -0.2 464,715 - tme DVU0414 0.64 -0.7 464,751 + tme DVU0414 0.67 +0.1 464,751 + tme DVU0414 0.67 +0.4 464,751 + tme DVU0414 0.67 -1.2 464,759 - tme DVU0414 0.68 -0.1 464,759 - tme DVU0414 0.68 +0.5 464,766 - tme DVU0414 0.68 +0.1 464,873 - tme DVU0414 0.76 +1.3 464,879 + tme DVU0414 0.77 +0.2 464,930 - tme DVU0414 0.81 -0.7 464,996 - tme DVU0414 0.86 -0.5 464,996 - tme DVU0414 0.86 +0.3 465,008 + tme DVU0414 0.86 +0.1 465,115 - +0.0 465,126 + -0.0 465,134 - +0.0 465,245 - -0.0 465,245 - -0.1 465,331 - -0.5 465,495 + pepA DVU0415 0.16 -0.2 465,604 + pepA DVU0415 0.24 +0.7 465,606 + pepA DVU0415 0.24 -0.5 465,644 - pepA DVU0415 0.26 -0.5 465,660 + pepA DVU0415 0.27 +0.5 465,663 - pepA DVU0415 0.27 -1.0 465,675 + pepA DVU0415 0.28 -0.0 465,683 + pepA DVU0415 0.29 -0.3 465,685 + pepA DVU0415 0.29 +0.1 465,746 - pepA DVU0415 0.33 -1.0 465,747 - pepA DVU0415 0.33 +0.1 465,765 - pepA DVU0415 0.34 +0.6 465,798 + pepA DVU0415 0.36 +0.3 465,940 + pepA DVU0415 0.46 +0.3 465,969 - pepA DVU0415 0.48 +0.3 466,085 + pepA DVU0415 0.55 -0.5 466,129 + pepA DVU0415 0.58 -0.0
Or see this region's nucleotide sequence