Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3623

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3622 and Rru_A3623 are separated by 200 nucleotidesRru_A3623 and Rru_A3624 are separated by 29 nucleotides Rru_A3622: Rru_A3622 - Protein of unknown function DUF255 (NCBI), at 4,160,797 to 4,162,839 _A3622 Rru_A3623: Rru_A3623 - hypothetical protein (NCBI), at 4,163,040 to 4,163,315 _A3623 Rru_A3624: Rru_A3624 - tRNA modification GTPase TrmE (NCBI), at 4,163,345 to 4,164,712 _A3624 Position (kb) 4163 4164Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4162.106 kb on + strand, within Rru_A3622at 4162.106 kb on + strand, within Rru_A3622at 4162.106 kb on + strand, within Rru_A3622at 4162.106 kb on + strand, within Rru_A3622at 4162.107 kb on - strand, within Rru_A3622at 4162.107 kb on - strand, within Rru_A3622at 4162.181 kb on + strand, within Rru_A3622at 4162.182 kb on - strand, within Rru_A3622at 4162.182 kb on - strand, within Rru_A3622at 4162.182 kb on - strand, within Rru_A3622at 4162.182 kb on - strand, within Rru_A3622at 4162.306 kb on - strand, within Rru_A3622at 4162.306 kb on - strand, within Rru_A3622at 4162.472 kb on + strand, within Rru_A3622at 4162.472 kb on + strand, within Rru_A3622at 4162.472 kb on + strand, within Rru_A3622at 4162.566 kb on - strand, within Rru_A3622at 4162.803 kb on - strandat 4162.803 kb on - strandat 4162.877 kb on + strandat 4162.877 kb on + strandat 4162.878 kb on - strandat 4162.886 kb on - strandat 4162.892 kb on + strandat 4163.066 kb on + strandat 4163.203 kb on + strand, within Rru_A3623at 4163.344 kb on + strandat 4163.344 kb on + strandat 4163.344 kb on + strandat 4163.344 kb on + strandat 4163.344 kb on + strandat 4163.344 kb on + strandat 4163.344 kb on + strandat 4163.345 kb on - strandat 4163.345 kb on - strandat 4163.345 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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4,162,106 + Rru_A3622 0.64 -2.9
4,162,106 + Rru_A3622 0.64 +0.1
4,162,106 + Rru_A3622 0.64 -5.6
4,162,106 + Rru_A3622 0.64 -2.4
4,162,107 - Rru_A3622 0.64 +0.1
4,162,107 - Rru_A3622 0.64 +0.1
4,162,181 + Rru_A3622 0.68 +0.1
4,162,182 - Rru_A3622 0.68 +0.1
4,162,182 - Rru_A3622 0.68 +0.1
4,162,182 - Rru_A3622 0.68 +0.1
4,162,182 - Rru_A3622 0.68 +0.1
4,162,306 - Rru_A3622 0.74 +0.1
4,162,306 - Rru_A3622 0.74 +0.1
4,162,472 + Rru_A3622 0.82 +0.1
4,162,472 + Rru_A3622 0.82 +0.1
4,162,472 + Rru_A3622 0.82 -1.5
4,162,566 - Rru_A3622 0.87 -2.2
4,162,803 - +0.1
4,162,803 - -2.9
4,162,877 + -0.9
4,162,877 + -2.1
4,162,878 - +0.1
4,162,886 - -2.4
4,162,892 + +0.1
4,163,066 + +0.1
4,163,203 + Rru_A3623 0.59 -2.8
4,163,344 + +0.1
4,163,344 + -2.7
4,163,344 + -3.7
4,163,344 + +0.1
4,163,344 + +0.1
4,163,344 + +0.1
4,163,344 + +0.1
4,163,345 - -1.5
4,163,345 - -3.8
4,163,345 - -2.5

Or see this region's nucleotide sequence