Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3383

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3382 and Rru_A3383 are separated by 158 nucleotidesRru_A3383 and Rru_A3384 overlap by 4 nucleotidesRru_A3384 and Rru_A3385 are separated by 120 nucleotides Rru_A3382: Rru_A3382 - Cobalamin biosynthesis protein CbiB (NCBI), at 3,898,851 to 3,899,861 _A3382 Rru_A3383: Rru_A3383 - Cobalamin (vitamin B12) biosynthesis CbiG protein (NCBI), at 3,900,020 to 3,901,414 _A3383 Rru_A3384: Rru_A3384 - Precorrin-4 C11-methyltransferase region (NCBI), at 3,901,411 to 3,902,172 _A3384 Rru_A3385: Rru_A3385 - OmpA/MotB (NCBI), at 3,902,293 to 3,903,021 _A3385 Position (kb) 3900 3901 3902Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3899.106 kb on + strand, within Rru_A3382at 3899.294 kb on + strand, within Rru_A3382at 3899.294 kb on + strand, within Rru_A3382at 3899.294 kb on + strand, within Rru_A3382at 3899.295 kb on - strand, within Rru_A3382at 3899.295 kb on - strand, within Rru_A3382at 3899.296 kb on + strand, within Rru_A3382at 3899.297 kb on - strand, within Rru_A3382at 3899.779 kb on + strandat 3899.779 kb on + strandat 3899.779 kb on + strandat 3899.780 kb on - strandat 3899.780 kb on - strandat 3899.780 kb on - strandat 3899.780 kb on - strandat 3899.780 kb on - strandat 3899.930 kb on + strandat 3899.930 kb on + strandat 3899.960 kb on + strandat 3899.960 kb on + strandat 3899.961 kb on - strandat 3899.963 kb on - strandat 3899.963 kb on - strandat 3899.963 kb on - strandat 3899.963 kb on - strandat 3899.963 kb on - strandat 3900.448 kb on + strand, within Rru_A3383at 3900.678 kb on + strand, within Rru_A3383at 3900.679 kb on - strand, within Rru_A3383at 3900.749 kb on + strand, within Rru_A3383at 3900.750 kb on - strand, within Rru_A3383at 3900.750 kb on - strand, within Rru_A3383at 3900.750 kb on - strand, within Rru_A3383at 3900.750 kb on - strand, within Rru_A3383at 3901.580 kb on + strand, within Rru_A3384at 3901.669 kb on + strand, within Rru_A3384at 3901.669 kb on + strand, within Rru_A3384at 3901.669 kb on + strand, within Rru_A3384at 3901.720 kb on + strand, within Rru_A3384at 3901.747 kb on + strand, within Rru_A3384at 3901.821 kb on + strand, within Rru_A3384at 3901.821 kb on + strand, within Rru_A3384at 3901.822 kb on - strand, within Rru_A3384at 3901.822 kb on - strand, within Rru_A3384at 3901.822 kb on - strand, within Rru_A3384at 3901.905 kb on - strand, within Rru_A3384at 3901.905 kb on - strand, within Rru_A3384at 3901.905 kb on - strand, within Rru_A3384at 3901.951 kb on + strand, within Rru_A3384at 3901.981 kb on + strand, within Rru_A3384at 3902.128 kb on + strandat 3902.129 kb on - strandat 3902.129 kb on - strandat 3902.129 kb on - strandat 3902.228 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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3,899,106 + Rru_A3382 0.25 +0.0
3,899,294 + Rru_A3382 0.44 +0.0
3,899,294 + Rru_A3382 0.44 -2.5
3,899,294 + Rru_A3382 0.44 +0.0
3,899,295 - Rru_A3382 0.44 -1.0
3,899,295 - Rru_A3382 0.44 -2.7
3,899,296 + Rru_A3382 0.44 +0.0
3,899,297 - Rru_A3382 0.44 +0.0
3,899,779 + +0.0
3,899,779 + +0.0
3,899,779 + +0.0
3,899,780 - +0.0
3,899,780 - +0.0
3,899,780 - +0.0
3,899,780 - -3.1
3,899,780 - +0.0
3,899,930 + -2.5
3,899,930 + +0.0
3,899,960 + +0.0
3,899,960 + +0.0
3,899,961 - +0.0
3,899,963 - -2.3
3,899,963 - +0.0
3,899,963 - +0.0
3,899,963 - +0.0
3,899,963 - +0.0
3,900,448 + Rru_A3383 0.31 -2.8
3,900,678 + Rru_A3383 0.47 -4.0
3,900,679 - Rru_A3383 0.47 +0.0
3,900,749 + Rru_A3383 0.52 -3.4
3,900,750 - Rru_A3383 0.52 -2.3
3,900,750 - Rru_A3383 0.52 +0.0
3,900,750 - Rru_A3383 0.52 -2.0
3,900,750 - Rru_A3383 0.52 +0.0
3,901,580 + Rru_A3384 0.22 +0.0
3,901,669 + Rru_A3384 0.34 +0.0
3,901,669 + Rru_A3384 0.34 +0.0
3,901,669 + Rru_A3384 0.34 +0.0
3,901,720 + Rru_A3384 0.41 -1.7
3,901,747 + Rru_A3384 0.44 +0.0
3,901,821 + Rru_A3384 0.54 +0.0
3,901,821 + Rru_A3384 0.54 +0.0
3,901,822 - Rru_A3384 0.54 -1.9
3,901,822 - Rru_A3384 0.54 +0.0
3,901,822 - Rru_A3384 0.54 +0.0
3,901,905 - Rru_A3384 0.65 +0.0
3,901,905 - Rru_A3384 0.65 +0.0
3,901,905 - Rru_A3384 0.65 +0.0
3,901,951 + Rru_A3384 0.71 +0.0
3,901,981 + Rru_A3384 0.75 +0.0
3,902,128 + +0.0
3,902,129 - -1.0
3,902,129 - -1.8
3,902,129 - +0.0
3,902,228 - +0.0

Or see this region's nucleotide sequence