Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3376

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3375 and Rru_A3376 are separated by 13 nucleotidesRru_A3376 and Rru_A3377 are separated by 32 nucleotidesRru_A3377 and Rru_A3378 are separated by 101 nucleotides Rru_A3375: Rru_A3375 - Glycosyl transferase, family 9 (NCBI), at 3,891,056 to 3,892,009 _A3375 Rru_A3376: Rru_A3376 - Glycosyl transferase, group 1 (NCBI), at 3,892,023 to 3,893,321 _A3376 Rru_A3377: Rru_A3377 - Alpha/beta hydrolase fold (NCBI), at 3,893,354 to 3,894,124 _A3377 Rru_A3378: Rru_A3378 - hypothetical protein (NCBI), at 3,894,226 to 3,895,152 _A3378 Position (kb) 3892 3893 3894Strain fitness (log2 ratio) -3 -2 -1 0 1at 3891.057 kb on + strandat 3891.057 kb on + strandat 3891.058 kb on - strandat 3891.058 kb on - strandat 3891.058 kb on - strandat 3893.307 kb on - strandat 3893.326 kb on - strandat 3893.326 kb on - strandat 3893.326 kb on - strandat 3893.389 kb on - strandat 3893.389 kb on - strandat 3893.389 kb on - strandat 3893.401 kb on - strandat 3893.421 kb on - strandat 3893.479 kb on + strand, within Rru_A3377at 3893.480 kb on - strand, within Rru_A3377at 3894.134 kb on + strandat 3894.134 kb on + strandat 3894.135 kb on - strandat 3894.164 kb on + strandat 3894.246 kb on + strandat 3894.246 kb on + strandat 3894.248 kb on + strandat 3894.248 kb on + strandat 3894.248 kb on + strandat 3894.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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3,891,057 + +0.0
3,891,057 + +0.0
3,891,058 - +0.0
3,891,058 - -2.9
3,891,058 - -2.0
3,893,307 - +0.0
3,893,326 - +0.0
3,893,326 - +0.0
3,893,326 - +0.0
3,893,389 - +0.0
3,893,389 - +0.0
3,893,389 - -2.8
3,893,401 - -1.8
3,893,421 - -1.5
3,893,479 + Rru_A3377 0.16 +0.0
3,893,480 - Rru_A3377 0.16 +0.0
3,894,134 + +0.0
3,894,134 + -1.0
3,894,135 - -3.3
3,894,164 + -1.6
3,894,246 + +0.0
3,894,246 + -2.0
3,894,248 + +0.0
3,894,248 + +0.0
3,894,248 + +0.0
3,894,249 - +0.0

Or see this region's nucleotide sequence