Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3256

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3255 and Rru_A3256 are separated by 104 nucleotidesRru_A3256 and Rru_A3257 overlap by 4 nucleotidesRru_A3257 and Rru_A3258 are separated by 55 nucleotides Rru_A3254: Rru_A3254 - ABC transporter component (NCBI), at 3,750,400 to 3,751,176 _A3254 Rru_A3255: Rru_A3255 - Protein of unknown function DUF214 (NCBI), at 3,751,173 to 3,752,069 _A3255 Rru_A3256: Rru_A3256 - Protein of unknown function DUF218 (NCBI), at 3,752,174 to 3,752,854 _A3256 Rru_A3257: Rru_A3257 - Phospholipid/glycerol acyltransferase (NCBI), at 3,752,851 to 3,753,618 _A3257 Rru_A3258: Rru_A3258 - Ribonucleotide reductase large subunit (NCBI), at 3,753,674 to 3,756,034 _A3258 Position (kb) 3752 3753Strain fitness (log2 ratio) -3 -2 -1 0 1at 3751.793 kb on + strand, within Rru_A3255at 3751.794 kb on - strand, within Rru_A3255at 3751.794 kb on - strand, within Rru_A3255at 3751.815 kb on + strand, within Rru_A3255at 3751.815 kb on + strand, within Rru_A3255at 3751.816 kb on - strand, within Rru_A3255at 3751.816 kb on - strand, within Rru_A3255at 3751.818 kb on - strand, within Rru_A3255at 3751.881 kb on - strand, within Rru_A3255at 3752.024 kb on + strandat 3752.025 kb on - strandat 3752.025 kb on - strandat 3752.025 kb on - strandat 3752.025 kb on - strandat 3752.025 kb on - strandat 3752.025 kb on - strandat 3752.025 kb on - strandat 3752.094 kb on + strandat 3752.094 kb on + strandat 3752.227 kb on - strandat 3752.494 kb on + strand, within Rru_A3256at 3752.494 kb on + strand, within Rru_A3256at 3752.524 kb on + strand, within Rru_A3256at 3752.574 kb on - strand, within Rru_A3256at 3752.714 kb on + strand, within Rru_A3256at 3753.716 kb on + strandat 3753.716 kb on + strandat 3753.716 kb on + strandat 3753.794 kb on + strandat 3753.794 kb on + strandat 3753.794 kb on + strandat 3753.794 kb on + strandat 3753.795 kb on - strandat 3753.795 kb on - strandat 3753.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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3,751,793 + Rru_A3255 0.69 +0.0
3,751,794 - Rru_A3255 0.69 -1.7
3,751,794 - Rru_A3255 0.69 -2.0
3,751,815 + Rru_A3255 0.72 +0.0
3,751,815 + Rru_A3255 0.72 +0.0
3,751,816 - Rru_A3255 0.72 +0.0
3,751,816 - Rru_A3255 0.72 -2.9
3,751,818 - Rru_A3255 0.72 +0.0
3,751,881 - Rru_A3255 0.79 +0.0
3,752,024 + +0.0
3,752,025 - +0.0
3,752,025 - -2.4
3,752,025 - +0.0
3,752,025 - +0.0
3,752,025 - +0.0
3,752,025 - +0.0
3,752,025 - +0.0
3,752,094 + +0.0
3,752,094 + +0.0
3,752,227 - -3.2
3,752,494 + Rru_A3256 0.47 +0.0
3,752,494 + Rru_A3256 0.47 +0.0
3,752,524 + Rru_A3256 0.51 -3.5
3,752,574 - Rru_A3256 0.59 -2.9
3,752,714 + Rru_A3256 0.79 -2.5
3,753,716 + +0.0
3,753,716 + +0.0
3,753,716 + +0.0
3,753,794 + -2.3
3,753,794 + +0.0
3,753,794 + +0.0
3,753,794 + +0.0
3,753,795 - -3.1
3,753,795 - +0.0
3,753,838 - -2.4

Or see this region's nucleotide sequence