Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3255 and Rru_A3256 are separated by 104 nucleotides Rru_A3256 and Rru_A3257 overlap by 4 nucleotides Rru_A3257 and Rru_A3258 are separated by 55 nucleotides
Rru_A3254: Rru_A3254 - ABC transporter component (NCBI), at 3,750,400 to 3,751,176
_A3254
Rru_A3255: Rru_A3255 - Protein of unknown function DUF214 (NCBI), at 3,751,173 to 3,752,069
_A3255
Rru_A3256: Rru_A3256 - Protein of unknown function DUF218 (NCBI), at 3,752,174 to 3,752,854
_A3256
Rru_A3257: Rru_A3257 - Phospholipid/glycerol acyltransferase (NCBI), at 3,752,851 to 3,753,618
_A3257
Rru_A3258: Rru_A3258 - Ribonucleotide reductase large subunit (NCBI), at 3,753,674 to 3,756,034
_A3258
Position (kb)
3752
3753 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3751.793 kb on + strand, within Rru_A3255 at 3751.794 kb on - strand, within Rru_A3255 at 3751.794 kb on - strand, within Rru_A3255 at 3751.815 kb on + strand, within Rru_A3255 at 3751.815 kb on + strand, within Rru_A3255 at 3751.816 kb on - strand, within Rru_A3255 at 3751.816 kb on - strand, within Rru_A3255 at 3751.818 kb on - strand, within Rru_A3255 at 3751.881 kb on - strand, within Rru_A3255 at 3752.024 kb on + strand at 3752.025 kb on - strand at 3752.025 kb on - strand at 3752.025 kb on - strand at 3752.025 kb on - strand at 3752.025 kb on - strand at 3752.025 kb on - strand at 3752.025 kb on - strand at 3752.094 kb on + strand at 3752.094 kb on + strand at 3752.227 kb on - strand at 3752.494 kb on + strand, within Rru_A3256 at 3752.494 kb on + strand, within Rru_A3256 at 3752.524 kb on + strand, within Rru_A3256 at 3752.574 kb on - strand, within Rru_A3256 at 3752.714 kb on + strand, within Rru_A3256 at 3753.716 kb on + strand at 3753.716 kb on + strand at 3753.716 kb on + strand at 3753.794 kb on + strand at 3753.794 kb on + strand at 3753.794 kb on + strand at 3753.794 kb on + strand at 3753.795 kb on - strand at 3753.795 kb on - strand at 3753.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 3,751,793 + Rru_A3255 0.69 +0.0 3,751,794 - Rru_A3255 0.69 -1.7 3,751,794 - Rru_A3255 0.69 -2.0 3,751,815 + Rru_A3255 0.72 +0.0 3,751,815 + Rru_A3255 0.72 +0.0 3,751,816 - Rru_A3255 0.72 +0.0 3,751,816 - Rru_A3255 0.72 -2.9 3,751,818 - Rru_A3255 0.72 +0.0 3,751,881 - Rru_A3255 0.79 +0.0 3,752,024 + +0.0 3,752,025 - +0.0 3,752,025 - -2.4 3,752,025 - +0.0 3,752,025 - +0.0 3,752,025 - +0.0 3,752,025 - +0.0 3,752,025 - +0.0 3,752,094 + +0.0 3,752,094 + +0.0 3,752,227 - -3.2 3,752,494 + Rru_A3256 0.47 +0.0 3,752,494 + Rru_A3256 0.47 +0.0 3,752,524 + Rru_A3256 0.51 -3.5 3,752,574 - Rru_A3256 0.59 -2.9 3,752,714 + Rru_A3256 0.79 -2.5 3,753,716 + +0.0 3,753,716 + +0.0 3,753,716 + +0.0 3,753,794 + -2.3 3,753,794 + +0.0 3,753,794 + +0.0 3,753,794 + +0.0 3,753,795 - -3.1 3,753,795 - +0.0 3,753,838 - -2.4
Or see this region's nucleotide sequence