Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3197

Experiment: L-Malic Acid (C) with ammonium chloride; no light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3194 and Rru_A3195 are separated by 96 nucleotidesRru_A3195 and Rru_A3196 overlap by 17 nucleotidesRru_A3196 and Rru_A3197 are separated by 35 nucleotidesRru_A3197 and Rru_A3198 are separated by 54 nucleotidesRru_A3198 and Rru_A3199 are separated by 252 nucleotides Rru_A3194: Rru_A3194 - SMF protein (NCBI), at 3,682,974 to 3,684,098 _A3194 Rru_A3195: Rru_A3195 - Helix-turn-helix protein, CopG (NCBI), at 3,684,195 to 3,684,419 _A3195 Rru_A3196: Rru_A3196 - Plasmid stabilization system (NCBI), at 3,684,403 to 3,684,672 _A3196 Rru_A3197: Rru_A3197 - HicB (NCBI), at 3,684,708 to 3,685,028 _A3197 Rru_A3198: Rru_A3198 - HicA protein (NCBI), at 3,685,083 to 3,685,364 _A3198 Rru_A3199: Rru_A3199 - extracellular solute-binding protein, family 1 (NCBI), at 3,685,617 to 3,686,633 _A3199 Position (kb) 3684 3685 3686Strain fitness (log2 ratio) -3 -2 -1 0 1at 3683.871 kb on - strand, within Rru_A3194at 3683.871 kb on - strand, within Rru_A3194at 3683.883 kb on + strand, within Rru_A3194at 3683.884 kb on - strand, within Rru_A3194at 3684.154 kb on - strandat 3684.154 kb on - strandat 3684.157 kb on + strandat 3684.157 kb on + strandat 3684.157 kb on + strandat 3684.157 kb on + strandat 3684.157 kb on + strandat 3684.157 kb on + strandat 3684.158 kb on - strandat 3684.158 kb on - strandat 3684.158 kb on - strandat 3684.158 kb on - strandat 3684.158 kb on - strandat 3684.158 kb on - strandat 3684.158 kb on - strandat 3684.159 kb on + strandat 3684.159 kb on + strandat 3684.159 kb on + strandat 3684.159 kb on + strandat 3684.159 kb on + strandat 3684.159 kb on + strandat 3684.160 kb on - strandat 3684.160 kb on - strandat 3684.160 kb on - strandat 3684.160 kb on - strandat 3684.160 kb on - strandat 3684.164 kb on + strandat 3684.164 kb on + strandat 3684.164 kb on + strandat 3684.164 kb on + strandat 3684.165 kb on - strandat 3684.165 kb on - strandat 3684.165 kb on - strandat 3684.165 kb on - strandat 3684.165 kb on - strandat 3684.165 kb on - strandat 3684.166 kb on + strandat 3684.166 kb on + strandat 3684.167 kb on - strandat 3684.167 kb on - strandat 3684.167 kb on - strandat 3684.167 kb on - strandat 3684.277 kb on - strand, within Rru_A3195at 3684.277 kb on - strand, within Rru_A3195at 3684.277 kb on - strand, within Rru_A3195at 3684.277 kb on - strand, within Rru_A3195at 3684.277 kb on - strand, within Rru_A3195at 3684.325 kb on - strand, within Rru_A3195at 3684.402 kb on + strandat 3684.402 kb on + strandat 3684.608 kb on + strand, within Rru_A3196at 3684.608 kb on + strand, within Rru_A3196at 3684.608 kb on + strand, within Rru_A3196at 3684.608 kb on + strand, within Rru_A3196at 3684.608 kb on + strand, within Rru_A3196at 3684.609 kb on - strand, within Rru_A3196at 3684.710 kb on - strandat 3684.710 kb on - strandat 3684.752 kb on + strand, within Rru_A3197at 3684.753 kb on - strand, within Rru_A3197at 3684.753 kb on - strand, within Rru_A3197at 3684.753 kb on - strand, within Rru_A3197at 3684.753 kb on - strand, within Rru_A3197at 3684.819 kb on - strand, within Rru_A3197at 3685.217 kb on + strand, within Rru_A3198at 3685.218 kb on - strand, within Rru_A3198at 3685.307 kb on + strand, within Rru_A3198at 3685.311 kb on + strand, within Rru_A3198at 3685.446 kb on + strandat 3685.449 kb on + strandat 3685.556 kb on + strandat 3685.734 kb on + strand, within Rru_A3199at 3685.734 kb on + strand, within Rru_A3199at 3685.734 kb on + strand, within Rru_A3199at 3685.736 kb on + strand, within Rru_A3199at 3685.736 kb on + strand, within Rru_A3199at 3685.736 kb on + strand, within Rru_A3199at 3685.736 kb on + strand, within Rru_A3199at 3685.736 kb on + strand, within Rru_A3199at 3685.737 kb on - strand, within Rru_A3199

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
remove
3,683,871 - Rru_A3194 0.80 -2.1
3,683,871 - Rru_A3194 0.80 +0.0
3,683,883 + Rru_A3194 0.81 -2.3
3,683,884 - Rru_A3194 0.81 +0.0
3,684,154 - +0.0
3,684,154 - -2.2
3,684,157 + +0.0
3,684,157 + -3.3
3,684,157 + +0.0
3,684,157 + +0.0
3,684,157 + -1.9
3,684,157 + +0.0
3,684,158 - +0.0
3,684,158 - -3.0
3,684,158 - +0.0
3,684,158 - +0.0
3,684,158 - +0.0
3,684,158 - +0.0
3,684,158 - +0.0
3,684,159 + +0.0
3,684,159 + +0.0
3,684,159 + +0.0
3,684,159 + +0.0
3,684,159 + +0.0
3,684,159 + +0.0
3,684,160 - +0.0
3,684,160 - +0.0
3,684,160 - +0.0
3,684,160 - +0.0
3,684,160 - -1.7
3,684,164 + +0.0
3,684,164 + +0.0
3,684,164 + -3.0
3,684,164 + +0.0
3,684,165 - -2.5
3,684,165 - +0.0
3,684,165 - -2.8
3,684,165 - +0.0
3,684,165 - -2.7
3,684,165 - +0.0
3,684,166 + +0.0
3,684,166 + +0.0
3,684,167 - -1.9
3,684,167 - +0.0
3,684,167 - -2.2
3,684,167 - -1.7
3,684,277 - Rru_A3195 0.36 +0.0
3,684,277 - Rru_A3195 0.36 +0.0
3,684,277 - Rru_A3195 0.36 +0.0
3,684,277 - Rru_A3195 0.36 +0.0
3,684,277 - Rru_A3195 0.36 +0.0
3,684,325 - Rru_A3195 0.58 +0.0
3,684,402 + -1.0
3,684,402 + +0.0
3,684,608 + Rru_A3196 0.76 -1.7
3,684,608 + Rru_A3196 0.76 +0.0
3,684,608 + Rru_A3196 0.76 +0.0
3,684,608 + Rru_A3196 0.76 -1.0
3,684,608 + Rru_A3196 0.76 -2.5
3,684,609 - Rru_A3196 0.76 +0.0
3,684,710 - +0.0
3,684,710 - +0.0
3,684,752 + Rru_A3197 0.14 -2.8
3,684,753 - Rru_A3197 0.14 -2.6
3,684,753 - Rru_A3197 0.14 +0.0
3,684,753 - Rru_A3197 0.14 -3.2
3,684,753 - Rru_A3197 0.14 -2.1
3,684,819 - Rru_A3197 0.35 +0.0
3,685,217 + Rru_A3198 0.48 -2.7
3,685,218 - Rru_A3198 0.48 +0.0
3,685,307 + Rru_A3198 0.79 +0.0
3,685,311 + Rru_A3198 0.81 +0.0
3,685,446 + +0.0
3,685,449 + +0.0
3,685,556 + -1.0
3,685,734 + Rru_A3199 0.12 -2.4
3,685,734 + Rru_A3199 0.12 +0.0
3,685,734 + Rru_A3199 0.12 +0.0
3,685,736 + Rru_A3199 0.12 +0.0
3,685,736 + Rru_A3199 0.12 +0.0
3,685,736 + Rru_A3199 0.12 -2.1
3,685,736 + Rru_A3199 0.12 +0.0
3,685,736 + Rru_A3199 0.12 +0.0
3,685,737 - Rru_A3199 0.12 +0.0

Or see this region's nucleotide sequence