Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3182 and Rru_A3183 are separated by 2 nucleotides Rru_A3183 and Rru_A3184 are separated by 11 nucleotides Rru_A3184 and Rru_A3185 overlap by 4 nucleotides
Rru_A3182: Rru_A3182 - Auxin Efflux Carrier (NCBI), at 3,673,301 to 3,674,227
_A3182
Rru_A3183: Rru_A3183 - diheme cytochrome c (NCBI), at 3,674,230 to 3,674,718
_A3183
Rru_A3184: Rru_A3184 - hypothetical protein (NCBI), at 3,674,730 to 3,675,626
_A3184
Rru_A3185: Rru_A3185 - hypothetical protein (NCBI), at 3,675,623 to 3,675,934
_A3185
Position (kb) 3674
3675 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3673.324 kb on - strand at 3673.418 kb on + strand, within Rru_A3182 at 3673.419 kb on - strand, within Rru_A3182 at 3673.419 kb on - strand, within Rru_A3182 at 3673.627 kb on + strand, within Rru_A3182 at 3673.627 kb on + strand, within Rru_A3182 at 3673.628 kb on - strand, within Rru_A3182 at 3673.628 kb on - strand, within Rru_A3182 at 3673.628 kb on - strand, within Rru_A3182 at 3673.628 kb on - strand, within Rru_A3182 at 3673.628 kb on - strand, within Rru_A3182 at 3673.628 kb on - strand, within Rru_A3182 at 3673.631 kb on + strand, within Rru_A3182 at 3673.631 kb on + strand, within Rru_A3182 at 3673.631 kb on + strand, within Rru_A3182 at 3673.631 kb on + strand, within Rru_A3182 at 3673.631 kb on + strand, within Rru_A3182 at 3673.632 kb on - strand, within Rru_A3182 at 3673.632 kb on - strand, within Rru_A3182 at 3673.632 kb on - strand, within Rru_A3182 at 3673.632 kb on - strand, within Rru_A3182 at 3673.632 kb on - strand, within Rru_A3182 at 3673.632 kb on - strand, within Rru_A3182 at 3673.632 kb on - strand, within Rru_A3182 at 3673.677 kb on + strand, within Rru_A3182 at 3673.944 kb on + strand, within Rru_A3182 at 3673.944 kb on + strand, within Rru_A3182 at 3674.114 kb on + strand, within Rru_A3182 at 3674.114 kb on + strand, within Rru_A3182 at 3674.115 kb on - strand, within Rru_A3182 at 3674.225 kb on + strand at 3674.231 kb on + strand at 3674.231 kb on + strand at 3674.358 kb on + strand, within Rru_A3183 at 3674.359 kb on - strand, within Rru_A3183 at 3674.583 kb on + strand, within Rru_A3183 at 3674.583 kb on + strand, within Rru_A3183 at 3674.755 kb on + strand at 3674.983 kb on + strand, within Rru_A3184 at 3675.334 kb on - strand, within Rru_A3184 at 3675.514 kb on + strand, within Rru_A3184 at 3675.538 kb on + strand at 3675.542 kb on + strand at 3675.542 kb on + strand at 3675.542 kb on + strand at 3675.543 kb on - strand at 3675.543 kb on - strand at 3675.543 kb on - strand at 3675.543 kb on - strand at 3675.562 kb on + strand at 3675.562 kb on + strand at 3675.562 kb on + strand at 3675.563 kb on - strand at 3675.563 kb on - strand at 3675.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 3,673,324 - +0.0 3,673,418 + Rru_A3182 0.13 +0.0 3,673,419 - Rru_A3182 0.13 -3.4 3,673,419 - Rru_A3182 0.13 +0.0 3,673,627 + Rru_A3182 0.35 -2.7 3,673,627 + Rru_A3182 0.35 +0.0 3,673,628 - Rru_A3182 0.35 -2.9 3,673,628 - Rru_A3182 0.35 +0.0 3,673,628 - Rru_A3182 0.35 -2.2 3,673,628 - Rru_A3182 0.35 +0.0 3,673,628 - Rru_A3182 0.35 +0.0 3,673,628 - Rru_A3182 0.35 +0.0 3,673,631 + Rru_A3182 0.36 -1.0 3,673,631 + Rru_A3182 0.36 +0.0 3,673,631 + Rru_A3182 0.36 +0.0 3,673,631 + Rru_A3182 0.36 +0.0 3,673,631 + Rru_A3182 0.36 +0.0 3,673,632 - Rru_A3182 0.36 +0.0 3,673,632 - Rru_A3182 0.36 +0.0 3,673,632 - Rru_A3182 0.36 -2.1 3,673,632 - Rru_A3182 0.36 +0.0 3,673,632 - Rru_A3182 0.36 -2.1 3,673,632 - Rru_A3182 0.36 +0.0 3,673,632 - Rru_A3182 0.36 -2.9 3,673,677 + Rru_A3182 0.41 +0.0 3,673,944 + Rru_A3182 0.69 -2.0 3,673,944 + Rru_A3182 0.69 +0.0 3,674,114 + Rru_A3182 0.88 +0.0 3,674,114 + Rru_A3182 0.88 -2.0 3,674,115 - Rru_A3182 0.88 +0.0 3,674,225 + +0.0 3,674,231 + +0.0 3,674,231 + -1.8 3,674,358 + Rru_A3183 0.26 -1.8 3,674,359 - Rru_A3183 0.26 +0.0 3,674,583 + Rru_A3183 0.72 -2.0 3,674,583 + Rru_A3183 0.72 +0.0 3,674,755 + +0.0 3,674,983 + Rru_A3184 0.28 -1.6 3,675,334 - Rru_A3184 0.67 +0.0 3,675,514 + Rru_A3184 0.87 +0.0 3,675,538 + +0.0 3,675,542 + -2.0 3,675,542 + +0.0 3,675,542 + +0.0 3,675,543 - +0.0 3,675,543 - +0.0 3,675,543 - +0.0 3,675,543 - +0.0 3,675,562 + +0.0 3,675,562 + +0.0 3,675,562 + -1.0 3,675,563 - -2.6 3,675,563 - +0.0 3,675,563 - +0.0
Or see this region's nucleotide sequence