Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3080

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3079 and Rru_A3080 are separated by 107 nucleotidesRru_A3080 and Rru_A3081 are separated by 186 nucleotidesRru_A3081 and Rru_A3082 are separated by 0 nucleotidesRru_A3082 and Rru_A3083 are separated by 71 nucleotides Rru_A3079: Rru_A3079 - 3-hydroxybutyryl-CoA dehydrogenase (NCBI), at 3,544,824 to 3,545,696 _A3079 Rru_A3080: Rru_A3080 - hypothetical protein (NCBI), at 3,545,804 to 3,547,000 _A3080 Rru_A3081: Rru_A3081 - Protein of unknown function DUF891 (NCBI), at 3,547,187 to 3,547,483 _A3081 Rru_A3082: Rru_A3082 - Predicted transcriptional regulator (NCBI), at 3,547,484 to 3,547,765 _A3082 Rru_A3083: Rru_A3083 - NADPH-dependent FMN reductase (NCBI), at 3,547,837 to 3,548,391 _A3083 Position (kb) 3545 3546 3547 3548Strain fitness (log2 ratio) -3 -2 -1 0 1at 3544.872 kb on - strandat 3544.872 kb on - strandat 3544.880 kb on + strandat 3544.881 kb on - strandat 3545.424 kb on + strand, within Rru_A3079at 3545.425 kb on - strand, within Rru_A3079at 3545.425 kb on - strand, within Rru_A3079at 3545.426 kb on + strand, within Rru_A3079at 3545.433 kb on + strand, within Rru_A3079at 3545.433 kb on + strand, within Rru_A3079at 3545.433 kb on + strand, within Rru_A3079at 3545.434 kb on - strand, within Rru_A3079at 3545.434 kb on - strand, within Rru_A3079at 3545.465 kb on + strand, within Rru_A3079at 3545.586 kb on + strand, within Rru_A3079at 3545.586 kb on + strand, within Rru_A3079at 3545.586 kb on + strand, within Rru_A3079at 3545.587 kb on - strand, within Rru_A3079at 3545.614 kb on - strandat 3545.614 kb on - strandat 3545.658 kb on + strandat 3545.658 kb on + strandat 3545.658 kb on + strandat 3545.658 kb on + strandat 3545.658 kb on + strandat 3545.659 kb on - strandat 3545.659 kb on - strandat 3545.664 kb on + strandat 3545.664 kb on + strandat 3546.001 kb on - strand, within Rru_A3080at 3546.110 kb on - strand, within Rru_A3080at 3546.486 kb on + strand, within Rru_A3080at 3546.555 kb on + strand, within Rru_A3080at 3546.556 kb on - strand, within Rru_A3080at 3546.556 kb on - strand, within Rru_A3080at 3546.764 kb on + strand, within Rru_A3080at 3546.764 kb on + strand, within Rru_A3080at 3546.764 kb on + strand, within Rru_A3080at 3546.911 kb on + strandat 3546.911 kb on + strandat 3546.911 kb on + strandat 3546.912 kb on - strandat 3546.942 kb on - strandat 3547.153 kb on + strandat 3547.154 kb on - strandat 3547.154 kb on - strandat 3547.154 kb on - strandat 3547.169 kb on + strandat 3547.370 kb on + strand, within Rru_A3081at 3547.371 kb on - strand, within Rru_A3081at 3547.371 kb on - strand, within Rru_A3081at 3547.377 kb on + strand, within Rru_A3081at 3547.377 kb on + strand, within Rru_A3081at 3547.377 kb on + strand, within Rru_A3081at 3547.378 kb on - strand, within Rru_A3081at 3547.378 kb on - strand, within Rru_A3081at 3547.442 kb on - strand, within Rru_A3081at 3547.583 kb on + strand, within Rru_A3082at 3547.583 kb on + strand, within Rru_A3082at 3547.583 kb on + strand, within Rru_A3082at 3547.583 kb on + strand, within Rru_A3082at 3547.584 kb on - strand, within Rru_A3082at 3547.586 kb on - strand, within Rru_A3082at 3547.671 kb on - strand, within Rru_A3082at 3547.672 kb on + strand, within Rru_A3082at 3547.672 kb on + strand, within Rru_A3082at 3547.672 kb on + strand, within Rru_A3082at 3547.763 kb on + strandat 3547.763 kb on + strandat 3547.764 kb on - strandat 3547.959 kb on + strand, within Rru_A3083at 3547.959 kb on + strand, within Rru_A3083at 3547.959 kb on + strand, within Rru_A3083at 3547.960 kb on - strand, within Rru_A3083at 3547.960 kb on - strand, within Rru_A3083at 3547.960 kb on - strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.962 kb on - strand, within Rru_A3083at 3547.962 kb on - strand, within Rru_A3083at 3547.962 kb on - strand, within Rru_A3083at 3547.962 kb on - strand, within Rru_A3083at 3547.962 kb on - strand, within Rru_A3083

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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3,544,872 - +0.0
3,544,872 - -3.4
3,544,880 + +0.0
3,544,881 - -1.0
3,545,424 + Rru_A3079 0.69 +0.0
3,545,425 - Rru_A3079 0.69 +0.0
3,545,425 - Rru_A3079 0.69 +0.0
3,545,426 + Rru_A3079 0.69 +0.0
3,545,433 + Rru_A3079 0.70 +0.0
3,545,433 + Rru_A3079 0.70 +0.0
3,545,433 + Rru_A3079 0.70 +0.0
3,545,434 - Rru_A3079 0.70 -2.4
3,545,434 - Rru_A3079 0.70 -2.7
3,545,465 + Rru_A3079 0.73 -2.9
3,545,586 + Rru_A3079 0.87 +0.0
3,545,586 + Rru_A3079 0.87 +0.0
3,545,586 + Rru_A3079 0.87 +0.0
3,545,587 - Rru_A3079 0.87 +0.0
3,545,614 - +0.0
3,545,614 - +0.0
3,545,658 + +0.0
3,545,658 + +0.0
3,545,658 + +0.0
3,545,658 + +0.0
3,545,658 + +0.0
3,545,659 - -2.4
3,545,659 - +0.0
3,545,664 + +0.0
3,545,664 + +0.0
3,546,001 - Rru_A3080 0.16 +0.0
3,546,110 - Rru_A3080 0.26 +0.0
3,546,486 + Rru_A3080 0.57 +0.0
3,546,555 + Rru_A3080 0.63 +0.0
3,546,556 - Rru_A3080 0.63 -2.7
3,546,556 - Rru_A3080 0.63 +0.0
3,546,764 + Rru_A3080 0.80 -2.9
3,546,764 + Rru_A3080 0.80 +0.0
3,546,764 + Rru_A3080 0.80 +0.0
3,546,911 + +0.0
3,546,911 + +0.0
3,546,911 + +0.0
3,546,912 - -2.1
3,546,942 - -2.6
3,547,153 + +0.0
3,547,154 - -1.0
3,547,154 - +0.0
3,547,154 - +0.0
3,547,169 + -3.7
3,547,370 + Rru_A3081 0.62 +0.0
3,547,371 - Rru_A3081 0.62 -3.0
3,547,371 - Rru_A3081 0.62 +0.0
3,547,377 + Rru_A3081 0.64 +0.0
3,547,377 + Rru_A3081 0.64 +0.0
3,547,377 + Rru_A3081 0.64 +0.0
3,547,378 - Rru_A3081 0.64 +0.0
3,547,378 - Rru_A3081 0.64 +0.0
3,547,442 - Rru_A3081 0.86 -2.2
3,547,583 + Rru_A3082 0.35 +0.0
3,547,583 + Rru_A3082 0.35 +0.0
3,547,583 + Rru_A3082 0.35 +0.0
3,547,583 + Rru_A3082 0.35 +0.0
3,547,584 - Rru_A3082 0.35 +0.0
3,547,586 - Rru_A3082 0.36 +0.0
3,547,671 - Rru_A3082 0.66 +0.0
3,547,672 + Rru_A3082 0.67 -2.5
3,547,672 + Rru_A3082 0.67 +0.0
3,547,672 + Rru_A3082 0.67 +0.0
3,547,763 + -2.5
3,547,763 + +0.0
3,547,764 - -2.8
3,547,959 + Rru_A3083 0.22 +0.0
3,547,959 + Rru_A3083 0.22 +0.0
3,547,959 + Rru_A3083 0.22 +0.0
3,547,960 - Rru_A3083 0.22 +0.0
3,547,960 - Rru_A3083 0.22 +0.0
3,547,960 - Rru_A3083 0.22 -2.5
3,547,961 + Rru_A3083 0.22 -2.1
3,547,961 + Rru_A3083 0.22 +0.0
3,547,961 + Rru_A3083 0.22 -0.8
3,547,961 + Rru_A3083 0.22 +0.0
3,547,961 + Rru_A3083 0.22 -2.7
3,547,961 + Rru_A3083 0.22 -2.9
3,547,961 + Rru_A3083 0.22 +0.0
3,547,962 - Rru_A3083 0.23 +0.0
3,547,962 - Rru_A3083 0.23 +0.0
3,547,962 - Rru_A3083 0.23 +0.0
3,547,962 - Rru_A3083 0.23 +0.0
3,547,962 - Rru_A3083 0.23 +0.0

Or see this region's nucleotide sequence