Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3022 and Rru_A3023 overlap by 4 nucleotides Rru_A3023 and Rru_A3024 overlap by 4 nucleotides Rru_A3024 and Rru_A3025 are separated by 66 nucleotides
Rru_A3022: Rru_A3022 - hypothetical protein (NCBI), at 3,480,560 to 3,481,333
_A3022
Rru_A3023: Rru_A3023 - hypothetical protein (NCBI), at 3,481,330 to 3,481,788
_A3023
Rru_A3024: Rru_A3024 - Prolyl 4-hydroxylase, alpha subunit (NCBI), at 3,481,785 to 3,482,411
_A3024
Rru_A3025: Rru_A3025 - hypothetical protein (NCBI), at 3,482,478 to 3,482,792
_A3025
Position (kb)
3481
3482 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3480.370 kb on + strand at 3480.371 kb on - strand at 3480.371 kb on - strand at 3480.407 kb on + strand at 3480.407 kb on + strand at 3480.408 kb on - strand at 3480.408 kb on - strand at 3480.434 kb on - strand at 3480.434 kb on - strand at 3480.888 kb on - strand, within Rru_A3022 at 3480.888 kb on - strand, within Rru_A3022 at 3480.893 kb on + strand, within Rru_A3022 at 3480.893 kb on + strand, within Rru_A3022 at 3480.893 kb on + strand, within Rru_A3022 at 3480.893 kb on + strand, within Rru_A3022 at 3480.894 kb on - strand, within Rru_A3022 at 3480.894 kb on - strand, within Rru_A3022 at 3480.894 kb on - strand, within Rru_A3022 at 3480.894 kb on - strand, within Rru_A3022 at 3480.894 kb on - strand, within Rru_A3022 at 3480.894 kb on - strand, within Rru_A3022 at 3480.894 kb on - strand, within Rru_A3022 at 3480.923 kb on + strand, within Rru_A3022 at 3480.924 kb on - strand, within Rru_A3022 at 3480.925 kb on + strand, within Rru_A3022 at 3480.925 kb on + strand, within Rru_A3022 at 3480.926 kb on - strand, within Rru_A3022 at 3480.938 kb on + strand, within Rru_A3022 at 3480.938 kb on + strand, within Rru_A3022 at 3480.948 kb on - strand, within Rru_A3022 at 3480.948 kb on - strand, within Rru_A3022 at 3480.953 kb on + strand, within Rru_A3022 at 3480.953 kb on + strand, within Rru_A3022 at 3480.954 kb on - strand, within Rru_A3022 at 3481.070 kb on + strand, within Rru_A3022 at 3481.070 kb on + strand, within Rru_A3022 at 3481.071 kb on - strand, within Rru_A3022 at 3481.227 kb on - strand, within Rru_A3022 at 3481.247 kb on + strand, within Rru_A3022 at 3481.247 kb on + strand, within Rru_A3022 at 3481.247 kb on + strand, within Rru_A3022 at 3481.248 kb on - strand, within Rru_A3022 at 3481.692 kb on + strand, within Rru_A3023 at 3481.692 kb on + strand, within Rru_A3023 at 3481.692 kb on + strand, within Rru_A3023 at 3481.693 kb on - strand, within Rru_A3023 at 3481.842 kb on + strand at 3481.842 kb on + strand at 3481.847 kb on + strand at 3481.847 kb on + strand at 3481.847 kb on + strand at 3481.848 kb on - strand, within Rru_A3024 at 3481.848 kb on - strand, within Rru_A3024 at 3481.848 kb on - strand, within Rru_A3024 at 3482.144 kb on + strand, within Rru_A3024 at 3482.144 kb on + strand, within Rru_A3024 at 3482.144 kb on + strand, within Rru_A3024 at 3482.144 kb on + strand, within Rru_A3024 at 3482.144 kb on + strand, within Rru_A3024 at 3482.145 kb on - strand, within Rru_A3024 at 3482.145 kb on - strand, within Rru_A3024 at 3482.145 kb on - strand, within Rru_A3024 at 3482.145 kb on - strand, within Rru_A3024 at 3482.145 kb on - strand, within Rru_A3024 at 3482.151 kb on - strand, within Rru_A3024 at 3482.151 kb on - strand, within Rru_A3024 at 3482.205 kb on + strand, within Rru_A3024 at 3482.205 kb on + strand, within Rru_A3024 at 3482.205 kb on + strand, within Rru_A3024 at 3482.205 kb on + strand, within Rru_A3024 at 3482.205 kb on + strand, within Rru_A3024 at 3482.205 kb on + strand, within Rru_A3024 at 3482.206 kb on - strand, within Rru_A3024 at 3482.206 kb on - strand, within Rru_A3024 at 3482.206 kb on - strand, within Rru_A3024 at 3482.206 kb on - strand, within Rru_A3024 at 3482.206 kb on - strand, within Rru_A3024 at 3482.206 kb on - strand, within Rru_A3024 at 3482.206 kb on - strand, within Rru_A3024 at 3482.209 kb on + strand, within Rru_A3024 at 3482.209 kb on + strand, within Rru_A3024 at 3482.209 kb on + strand, within Rru_A3024 at 3482.210 kb on - strand, within Rru_A3024 at 3482.210 kb on - strand, within Rru_A3024 at 3482.210 kb on - strand, within Rru_A3024 at 3482.210 kb on - strand, within Rru_A3024 at 3482.284 kb on + strand, within Rru_A3024 at 3482.284 kb on + strand, within Rru_A3024 at 3482.285 kb on - strand, within Rru_A3024 at 3482.389 kb on + strand at 3482.390 kb on - strand at 3482.390 kb on - strand at 3482.419 kb on + strand at 3482.420 kb on - strand at 3482.589 kb on + strand, within Rru_A3025 at 3482.589 kb on + strand, within Rru_A3025 at 3482.589 kb on + strand, within Rru_A3025 at 3482.589 kb on + strand, within Rru_A3025 at 3482.589 kb on + strand, within Rru_A3025 at 3482.590 kb on - strand, within Rru_A3025 at 3482.590 kb on - strand, within Rru_A3025 at 3482.590 kb on - strand, within Rru_A3025 at 3482.590 kb on - strand, within Rru_A3025 at 3482.590 kb on - strand, within Rru_A3025 at 3482.590 kb on - strand, within Rru_A3025
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 3,480,370 + -0.0 3,480,371 - -2.6 3,480,371 - -0.0 3,480,407 + -0.0 3,480,407 + -1.9 3,480,408 - -0.0 3,480,408 - -2.0 3,480,434 - -0.0 3,480,434 - -0.0 3,480,888 - Rru_A3022 0.42 -0.0 3,480,888 - Rru_A3022 0.42 -0.0 3,480,893 + Rru_A3022 0.43 -1.9 3,480,893 + Rru_A3022 0.43 -0.0 3,480,893 + Rru_A3022 0.43 -2.7 3,480,893 + Rru_A3022 0.43 -1.6 3,480,894 - Rru_A3022 0.43 -1.6 3,480,894 - Rru_A3022 0.43 -1.3 3,480,894 - Rru_A3022 0.43 -4.3 3,480,894 - Rru_A3022 0.43 -0.0 3,480,894 - Rru_A3022 0.43 -3.0 3,480,894 - Rru_A3022 0.43 -1.0 3,480,894 - Rru_A3022 0.43 -0.0 3,480,923 + Rru_A3022 0.47 -0.0 3,480,924 - Rru_A3022 0.47 -0.0 3,480,925 + Rru_A3022 0.47 -0.0 3,480,925 + Rru_A3022 0.47 -0.0 3,480,926 - Rru_A3022 0.47 -0.0 3,480,938 + Rru_A3022 0.49 -0.0 3,480,938 + Rru_A3022 0.49 -0.0 3,480,948 - Rru_A3022 0.50 -0.0 3,480,948 - Rru_A3022 0.50 -0.0 3,480,953 + Rru_A3022 0.51 -1.9 3,480,953 + Rru_A3022 0.51 -0.0 3,480,954 - Rru_A3022 0.51 -0.0 3,481,070 + Rru_A3022 0.66 -2.1 3,481,070 + Rru_A3022 0.66 -0.0 3,481,071 - Rru_A3022 0.66 -2.3 3,481,227 - Rru_A3022 0.86 -1.0 3,481,247 + Rru_A3022 0.89 -2.8 3,481,247 + Rru_A3022 0.89 -3.5 3,481,247 + Rru_A3022 0.89 -0.0 3,481,248 - Rru_A3022 0.89 -0.0 3,481,692 + Rru_A3023 0.79 -0.0 3,481,692 + Rru_A3023 0.79 -2.9 3,481,692 + Rru_A3023 0.79 -1.0 3,481,693 - Rru_A3023 0.79 -2.7 3,481,842 + -0.0 3,481,842 + -2.0 3,481,847 + -0.0 3,481,847 + -0.0 3,481,847 + -1.8 3,481,848 - Rru_A3024 0.10 -0.0 3,481,848 - Rru_A3024 0.10 -1.9 3,481,848 - Rru_A3024 0.10 -0.0 3,482,144 + Rru_A3024 0.57 -0.0 3,482,144 + Rru_A3024 0.57 -1.7 3,482,144 + Rru_A3024 0.57 -1.9 3,482,144 + Rru_A3024 0.57 -0.0 3,482,144 + Rru_A3024 0.57 -0.0 3,482,145 - Rru_A3024 0.57 -0.0 3,482,145 - Rru_A3024 0.57 -0.0 3,482,145 - Rru_A3024 0.57 -0.0 3,482,145 - Rru_A3024 0.57 -2.0 3,482,145 - Rru_A3024 0.57 -1.0 3,482,151 - Rru_A3024 0.58 -0.0 3,482,151 - Rru_A3024 0.58 -0.0 3,482,205 + Rru_A3024 0.67 -0.0 3,482,205 + Rru_A3024 0.67 -0.0 3,482,205 + Rru_A3024 0.67 -2.0 3,482,205 + Rru_A3024 0.67 -0.0 3,482,205 + Rru_A3024 0.67 -0.0 3,482,205 + Rru_A3024 0.67 -0.0 3,482,206 - Rru_A3024 0.67 -0.0 3,482,206 - Rru_A3024 0.67 -0.0 3,482,206 - Rru_A3024 0.67 -2.6 3,482,206 - Rru_A3024 0.67 -0.0 3,482,206 - Rru_A3024 0.67 -2.0 3,482,206 - Rru_A3024 0.67 -0.0 3,482,206 - Rru_A3024 0.67 -0.0 3,482,209 + Rru_A3024 0.68 -0.0 3,482,209 + Rru_A3024 0.68 -0.0 3,482,209 + Rru_A3024 0.68 -0.0 3,482,210 - Rru_A3024 0.68 -0.0 3,482,210 - Rru_A3024 0.68 -0.0 3,482,210 - Rru_A3024 0.68 -1.0 3,482,210 - Rru_A3024 0.68 -0.0 3,482,284 + Rru_A3024 0.80 -2.3 3,482,284 + Rru_A3024 0.80 -0.0 3,482,285 - Rru_A3024 0.80 -2.7 3,482,389 + -0.0 3,482,390 - -0.0 3,482,390 - -1.0 3,482,419 + -0.0 3,482,420 - -2.8 3,482,589 + Rru_A3025 0.35 -1.7 3,482,589 + Rru_A3025 0.35 -0.0 3,482,589 + Rru_A3025 0.35 -2.1 3,482,589 + Rru_A3025 0.35 -0.0 3,482,589 + Rru_A3025 0.35 -2.7 3,482,590 - Rru_A3025 0.36 -2.0 3,482,590 - Rru_A3025 0.36 -0.0 3,482,590 - Rru_A3025 0.36 -0.0 3,482,590 - Rru_A3025 0.36 -0.0 3,482,590 - Rru_A3025 0.36 -1.0 3,482,590 - Rru_A3025 0.36 -0.0
Or see this region's nucleotide sequence