Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3002 and Rru_A3003 are separated by 134 nucleotides Rru_A3003 and Rru_A3004 are separated by 66 nucleotides
Rru_A3002: Rru_A3002 - Nicotinamidase (NCBI), at 3,459,252 to 3,459,857
_A3002
Rru_A3003: Rru_A3003 - Transcriptional Regulator, GntR family (NCBI), at 3,459,992 to 3,460,642
_A3003
Rru_A3004: Rru_A3004 - Aminotransferase, class I and II (NCBI), at 3,460,709 to 3,461,944
_A3004
Position (kb)
3459
3460
3461 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3459.001 kb on + strand at 3459.027 kb on - strand at 3459.560 kb on + strand, within Rru_A3002 at 3459.560 kb on + strand, within Rru_A3002 at 3459.560 kb on + strand, within Rru_A3002 at 3459.561 kb on - strand, within Rru_A3002 at 3459.561 kb on - strand, within Rru_A3002 at 3459.561 kb on - strand, within Rru_A3002 at 3459.597 kb on + strand, within Rru_A3002 at 3459.597 kb on + strand, within Rru_A3002 at 3459.597 kb on + strand, within Rru_A3002 at 3459.597 kb on + strand, within Rru_A3002 at 3459.598 kb on - strand, within Rru_A3002 at 3459.598 kb on - strand, within Rru_A3002 at 3459.598 kb on - strand, within Rru_A3002 at 3459.598 kb on - strand, within Rru_A3002 at 3459.714 kb on + strand, within Rru_A3002 at 3459.715 kb on - strand, within Rru_A3002 at 3459.912 kb on + strand at 3459.972 kb on + strand at 3460.007 kb on + strand at 3460.007 kb on + strand at 3460.007 kb on + strand at 3460.008 kb on - strand at 3460.008 kb on - strand at 3460.008 kb on - strand at 3460.008 kb on - strand at 3460.008 kb on - strand at 3460.008 kb on - strand at 3460.008 kb on - strand at 3460.008 kb on - strand at 3460.008 kb on - strand at 3460.009 kb on + strand at 3460.009 kb on + strand at 3460.009 kb on + strand at 3460.009 kb on + strand at 3460.009 kb on + strand at 3460.026 kb on - strand at 3460.150 kb on - strand, within Rru_A3003 at 3460.204 kb on + strand, within Rru_A3003 at 3460.205 kb on - strand, within Rru_A3003 at 3460.367 kb on + strand, within Rru_A3003 at 3460.367 kb on + strand, within Rru_A3003 at 3460.367 kb on + strand, within Rru_A3003 at 3460.368 kb on - strand, within Rru_A3003 at 3460.368 kb on - strand, within Rru_A3003 at 3460.424 kb on + strand, within Rru_A3003 at 3460.424 kb on + strand, within Rru_A3003 at 3460.425 kb on - strand, within Rru_A3003 at 3460.425 kb on - strand, within Rru_A3003 at 3460.602 kb on - strand at 3460.641 kb on - strand at 3460.816 kb on + strand at 3460.816 kb on + strand at 3460.816 kb on + strand at 3460.817 kb on - strand at 3461.025 kb on + strand, within Rru_A3004 at 3461.025 kb on + strand, within Rru_A3004 at 3461.026 kb on - strand, within Rru_A3004 at 3461.026 kb on - strand, within Rru_A3004 at 3461.058 kb on + strand, within Rru_A3004 at 3461.058 kb on + strand, within Rru_A3004 at 3461.059 kb on - strand, within Rru_A3004 at 3461.059 kb on - strand, within Rru_A3004 at 3461.059 kb on - strand, within Rru_A3004 at 3461.059 kb on - strand, within Rru_A3004 at 3461.221 kb on - strand, within Rru_A3004 at 3461.313 kb on + strand, within Rru_A3004 at 3461.313 kb on + strand, within Rru_A3004 at 3461.427 kb on + strand, within Rru_A3004 at 3461.427 kb on + strand, within Rru_A3004 at 3461.427 kb on + strand, within Rru_A3004 at 3461.427 kb on + strand, within Rru_A3004 at 3461.427 kb on + strand, within Rru_A3004 at 3461.428 kb on - strand, within Rru_A3004 at 3461.518 kb on - strand, within Rru_A3004 at 3461.518 kb on - strand, within Rru_A3004 at 3461.559 kb on + strand, within Rru_A3004 at 3461.559 kb on + strand, within Rru_A3004 at 3461.577 kb on + strand, within Rru_A3004 at 3461.577 kb on + strand, within Rru_A3004 at 3461.577 kb on + strand, within Rru_A3004 at 3461.577 kb on + strand, within Rru_A3004 at 3461.578 kb on - strand, within Rru_A3004 at 3461.578 kb on - strand, within Rru_A3004 at 3461.578 kb on - strand, within Rru_A3004 at 3461.578 kb on - strand, within Rru_A3004 at 3461.617 kb on - strand, within Rru_A3004 at 3461.617 kb on - strand, within Rru_A3004
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 3,459,001 + -1.6 3,459,027 - -0.0 3,459,560 + Rru_A3002 0.51 -0.0 3,459,560 + Rru_A3002 0.51 -0.0 3,459,560 + Rru_A3002 0.51 -0.0 3,459,561 - Rru_A3002 0.51 -0.0 3,459,561 - Rru_A3002 0.51 -0.0 3,459,561 - Rru_A3002 0.51 -0.0 3,459,597 + Rru_A3002 0.57 -0.0 3,459,597 + Rru_A3002 0.57 -1.1 3,459,597 + Rru_A3002 0.57 -0.0 3,459,597 + Rru_A3002 0.57 -0.0 3,459,598 - Rru_A3002 0.57 -0.0 3,459,598 - Rru_A3002 0.57 -0.0 3,459,598 - Rru_A3002 0.57 -0.0 3,459,598 - Rru_A3002 0.57 -2.7 3,459,714 + Rru_A3002 0.76 -0.0 3,459,715 - Rru_A3002 0.76 -0.0 3,459,912 + -0.0 3,459,972 + -0.0 3,460,007 + -0.0 3,460,007 + -2.0 3,460,007 + -2.0 3,460,008 - -0.0 3,460,008 - -2.8 3,460,008 - -2.4 3,460,008 - -0.0 3,460,008 - -0.0 3,460,008 - -0.0 3,460,008 - -2.5 3,460,008 - -0.0 3,460,008 - -0.0 3,460,009 + -0.0 3,460,009 + -0.0 3,460,009 + -0.0 3,460,009 + -2.5 3,460,009 + -0.0 3,460,026 - -3.2 3,460,150 - Rru_A3003 0.24 -2.8 3,460,204 + Rru_A3003 0.33 -0.0 3,460,205 - Rru_A3003 0.33 -2.7 3,460,367 + Rru_A3003 0.58 -0.0 3,460,367 + Rru_A3003 0.58 -2.9 3,460,367 + Rru_A3003 0.58 -4.9 3,460,368 - Rru_A3003 0.58 -0.0 3,460,368 - Rru_A3003 0.58 -0.0 3,460,424 + Rru_A3003 0.66 -2.1 3,460,424 + Rru_A3003 0.66 -0.0 3,460,425 - Rru_A3003 0.67 -1.0 3,460,425 - Rru_A3003 0.67 -2.3 3,460,602 - -2.8 3,460,641 - -0.0 3,460,816 + -0.0 3,460,816 + -0.0 3,460,816 + -0.0 3,460,817 - -0.0 3,461,025 + Rru_A3004 0.26 -2.5 3,461,025 + Rru_A3004 0.26 -0.9 3,461,026 - Rru_A3004 0.26 -0.0 3,461,026 - Rru_A3004 0.26 -0.0 3,461,058 + Rru_A3004 0.28 -0.0 3,461,058 + Rru_A3004 0.28 -0.0 3,461,059 - Rru_A3004 0.28 -0.0 3,461,059 - Rru_A3004 0.28 -0.0 3,461,059 - Rru_A3004 0.28 -2.1 3,461,059 - Rru_A3004 0.28 -2.8 3,461,221 - Rru_A3004 0.41 -0.0 3,461,313 + Rru_A3004 0.49 -0.0 3,461,313 + Rru_A3004 0.49 -0.0 3,461,427 + Rru_A3004 0.58 -0.0 3,461,427 + Rru_A3004 0.58 -2.1 3,461,427 + Rru_A3004 0.58 -1.9 3,461,427 + Rru_A3004 0.58 -0.0 3,461,427 + Rru_A3004 0.58 -0.0 3,461,428 - Rru_A3004 0.58 -0.0 3,461,518 - Rru_A3004 0.65 -0.0 3,461,518 - Rru_A3004 0.65 -2.5 3,461,559 + Rru_A3004 0.69 -1.7 3,461,559 + Rru_A3004 0.69 -2.9 3,461,577 + Rru_A3004 0.70 -0.0 3,461,577 + Rru_A3004 0.70 -1.9 3,461,577 + Rru_A3004 0.70 -0.0 3,461,577 + Rru_A3004 0.70 -1.9 3,461,578 - Rru_A3004 0.70 -0.0 3,461,578 - Rru_A3004 0.70 -0.0 3,461,578 - Rru_A3004 0.70 -0.0 3,461,578 - Rru_A3004 0.70 -0.0 3,461,617 - Rru_A3004 0.73 -0.0 3,461,617 - Rru_A3004 0.73 -0.0
Or see this region's nucleotide sequence