Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3003

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3002 and Rru_A3003 are separated by 134 nucleotidesRru_A3003 and Rru_A3004 are separated by 66 nucleotides Rru_A3002: Rru_A3002 - Nicotinamidase (NCBI), at 3,459,252 to 3,459,857 _A3002 Rru_A3003: Rru_A3003 - Transcriptional Regulator, GntR family (NCBI), at 3,459,992 to 3,460,642 _A3003 Rru_A3004: Rru_A3004 - Aminotransferase, class I and II (NCBI), at 3,460,709 to 3,461,944 _A3004 Position (kb) 3459 3460 3461Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3459.001 kb on + strandat 3459.027 kb on - strandat 3459.560 kb on + strand, within Rru_A3002at 3459.560 kb on + strand, within Rru_A3002at 3459.560 kb on + strand, within Rru_A3002at 3459.561 kb on - strand, within Rru_A3002at 3459.561 kb on - strand, within Rru_A3002at 3459.561 kb on - strand, within Rru_A3002at 3459.597 kb on + strand, within Rru_A3002at 3459.597 kb on + strand, within Rru_A3002at 3459.597 kb on + strand, within Rru_A3002at 3459.597 kb on + strand, within Rru_A3002at 3459.598 kb on - strand, within Rru_A3002at 3459.598 kb on - strand, within Rru_A3002at 3459.598 kb on - strand, within Rru_A3002at 3459.598 kb on - strand, within Rru_A3002at 3459.714 kb on + strand, within Rru_A3002at 3459.715 kb on - strand, within Rru_A3002at 3459.912 kb on + strandat 3459.972 kb on + strandat 3460.007 kb on + strandat 3460.007 kb on + strandat 3460.007 kb on + strandat 3460.008 kb on - strandat 3460.008 kb on - strandat 3460.008 kb on - strandat 3460.008 kb on - strandat 3460.008 kb on - strandat 3460.008 kb on - strandat 3460.008 kb on - strandat 3460.008 kb on - strandat 3460.008 kb on - strandat 3460.009 kb on + strandat 3460.009 kb on + strandat 3460.009 kb on + strandat 3460.009 kb on + strandat 3460.009 kb on + strandat 3460.026 kb on - strandat 3460.150 kb on - strand, within Rru_A3003at 3460.204 kb on + strand, within Rru_A3003at 3460.205 kb on - strand, within Rru_A3003at 3460.367 kb on + strand, within Rru_A3003at 3460.367 kb on + strand, within Rru_A3003at 3460.367 kb on + strand, within Rru_A3003at 3460.368 kb on - strand, within Rru_A3003at 3460.368 kb on - strand, within Rru_A3003at 3460.424 kb on + strand, within Rru_A3003at 3460.424 kb on + strand, within Rru_A3003at 3460.425 kb on - strand, within Rru_A3003at 3460.425 kb on - strand, within Rru_A3003at 3460.602 kb on - strandat 3460.641 kb on - strandat 3460.816 kb on + strandat 3460.816 kb on + strandat 3460.816 kb on + strandat 3460.817 kb on - strandat 3461.025 kb on + strand, within Rru_A3004at 3461.025 kb on + strand, within Rru_A3004at 3461.026 kb on - strand, within Rru_A3004at 3461.026 kb on - strand, within Rru_A3004at 3461.058 kb on + strand, within Rru_A3004at 3461.058 kb on + strand, within Rru_A3004at 3461.059 kb on - strand, within Rru_A3004at 3461.059 kb on - strand, within Rru_A3004at 3461.059 kb on - strand, within Rru_A3004at 3461.059 kb on - strand, within Rru_A3004at 3461.221 kb on - strand, within Rru_A3004at 3461.313 kb on + strand, within Rru_A3004at 3461.313 kb on + strand, within Rru_A3004at 3461.427 kb on + strand, within Rru_A3004at 3461.427 kb on + strand, within Rru_A3004at 3461.427 kb on + strand, within Rru_A3004at 3461.427 kb on + strand, within Rru_A3004at 3461.427 kb on + strand, within Rru_A3004at 3461.428 kb on - strand, within Rru_A3004at 3461.518 kb on - strand, within Rru_A3004at 3461.518 kb on - strand, within Rru_A3004at 3461.559 kb on + strand, within Rru_A3004at 3461.559 kb on + strand, within Rru_A3004at 3461.577 kb on + strand, within Rru_A3004at 3461.577 kb on + strand, within Rru_A3004at 3461.577 kb on + strand, within Rru_A3004at 3461.577 kb on + strand, within Rru_A3004at 3461.578 kb on - strand, within Rru_A3004at 3461.578 kb on - strand, within Rru_A3004at 3461.578 kb on - strand, within Rru_A3004at 3461.578 kb on - strand, within Rru_A3004at 3461.617 kb on - strand, within Rru_A3004at 3461.617 kb on - strand, within Rru_A3004

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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3,459,001 + -1.6
3,459,027 - -0.0
3,459,560 + Rru_A3002 0.51 -0.0
3,459,560 + Rru_A3002 0.51 -0.0
3,459,560 + Rru_A3002 0.51 -0.0
3,459,561 - Rru_A3002 0.51 -0.0
3,459,561 - Rru_A3002 0.51 -0.0
3,459,561 - Rru_A3002 0.51 -0.0
3,459,597 + Rru_A3002 0.57 -0.0
3,459,597 + Rru_A3002 0.57 -1.1
3,459,597 + Rru_A3002 0.57 -0.0
3,459,597 + Rru_A3002 0.57 -0.0
3,459,598 - Rru_A3002 0.57 -0.0
3,459,598 - Rru_A3002 0.57 -0.0
3,459,598 - Rru_A3002 0.57 -0.0
3,459,598 - Rru_A3002 0.57 -2.7
3,459,714 + Rru_A3002 0.76 -0.0
3,459,715 - Rru_A3002 0.76 -0.0
3,459,912 + -0.0
3,459,972 + -0.0
3,460,007 + -0.0
3,460,007 + -2.0
3,460,007 + -2.0
3,460,008 - -0.0
3,460,008 - -2.8
3,460,008 - -2.4
3,460,008 - -0.0
3,460,008 - -0.0
3,460,008 - -0.0
3,460,008 - -2.5
3,460,008 - -0.0
3,460,008 - -0.0
3,460,009 + -0.0
3,460,009 + -0.0
3,460,009 + -0.0
3,460,009 + -2.5
3,460,009 + -0.0
3,460,026 - -3.2
3,460,150 - Rru_A3003 0.24 -2.8
3,460,204 + Rru_A3003 0.33 -0.0
3,460,205 - Rru_A3003 0.33 -2.7
3,460,367 + Rru_A3003 0.58 -0.0
3,460,367 + Rru_A3003 0.58 -2.9
3,460,367 + Rru_A3003 0.58 -4.9
3,460,368 - Rru_A3003 0.58 -0.0
3,460,368 - Rru_A3003 0.58 -0.0
3,460,424 + Rru_A3003 0.66 -2.1
3,460,424 + Rru_A3003 0.66 -0.0
3,460,425 - Rru_A3003 0.67 -1.0
3,460,425 - Rru_A3003 0.67 -2.3
3,460,602 - -2.8
3,460,641 - -0.0
3,460,816 + -0.0
3,460,816 + -0.0
3,460,816 + -0.0
3,460,817 - -0.0
3,461,025 + Rru_A3004 0.26 -2.5
3,461,025 + Rru_A3004 0.26 -0.9
3,461,026 - Rru_A3004 0.26 -0.0
3,461,026 - Rru_A3004 0.26 -0.0
3,461,058 + Rru_A3004 0.28 -0.0
3,461,058 + Rru_A3004 0.28 -0.0
3,461,059 - Rru_A3004 0.28 -0.0
3,461,059 - Rru_A3004 0.28 -0.0
3,461,059 - Rru_A3004 0.28 -2.1
3,461,059 - Rru_A3004 0.28 -2.8
3,461,221 - Rru_A3004 0.41 -0.0
3,461,313 + Rru_A3004 0.49 -0.0
3,461,313 + Rru_A3004 0.49 -0.0
3,461,427 + Rru_A3004 0.58 -0.0
3,461,427 + Rru_A3004 0.58 -2.1
3,461,427 + Rru_A3004 0.58 -1.9
3,461,427 + Rru_A3004 0.58 -0.0
3,461,427 + Rru_A3004 0.58 -0.0
3,461,428 - Rru_A3004 0.58 -0.0
3,461,518 - Rru_A3004 0.65 -0.0
3,461,518 - Rru_A3004 0.65 -2.5
3,461,559 + Rru_A3004 0.69 -1.7
3,461,559 + Rru_A3004 0.69 -2.9
3,461,577 + Rru_A3004 0.70 -0.0
3,461,577 + Rru_A3004 0.70 -1.9
3,461,577 + Rru_A3004 0.70 -0.0
3,461,577 + Rru_A3004 0.70 -1.9
3,461,578 - Rru_A3004 0.70 -0.0
3,461,578 - Rru_A3004 0.70 -0.0
3,461,578 - Rru_A3004 0.70 -0.0
3,461,578 - Rru_A3004 0.70 -0.0
3,461,617 - Rru_A3004 0.73 -0.0
3,461,617 - Rru_A3004 0.73 -0.0

Or see this region's nucleotide sequence