Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2937

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2936 and Rru_A2937 are separated by 102 nucleotidesRru_A2937 and Rru_A2938 are separated by 21 nucleotides Rru_A2936: Rru_A2936 - Dihydroorotase multifunctional complex type (NCBI), at 3,383,106 to 3,384,467 _A2936 Rru_A2937: Rru_A2937 - Asparagine synthase, glutamine-hydrolyzing (NCBI), at 3,384,570 to 3,386,330 _A2937 Rru_A2938: Rru_A2938 - Glycosyl transferase, group 1 (NCBI), at 3,386,352 to 3,387,407 _A2938 Position (kb) 3384 3385 3386 3387Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3383.662 kb on + strand, within Rru_A2936at 3383.662 kb on + strand, within Rru_A2936at 3383.662 kb on + strand, within Rru_A2936at 3383.662 kb on + strand, within Rru_A2936at 3383.663 kb on - strand, within Rru_A2936at 3383.663 kb on - strand, within Rru_A2936at 3384.259 kb on - strand, within Rru_A2936at 3384.259 kb on - strand, within Rru_A2936at 3384.259 kb on - strand, within Rru_A2936at 3384.259 kb on - strand, within Rru_A2936at 3384.410 kb on + strandat 3384.454 kb on + strandat 3384.454 kb on + strandat 3384.454 kb on + strandat 3384.454 kb on + strandat 3384.454 kb on + strandat 3384.487 kb on - strandat 3384.487 kb on - strandat 3384.487 kb on - strandat 3385.975 kb on + strand, within Rru_A2937at 3386.020 kb on + strand, within Rru_A2937at 3386.100 kb on - strand, within Rru_A2937

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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3,383,662 + Rru_A2936 0.41 -4.0
3,383,662 + Rru_A2936 0.41 -0.0
3,383,662 + Rru_A2936 0.41 -0.0
3,383,662 + Rru_A2936 0.41 -0.0
3,383,663 - Rru_A2936 0.41 -0.0
3,383,663 - Rru_A2936 0.41 -3.5
3,384,259 - Rru_A2936 0.85 -4.1
3,384,259 - Rru_A2936 0.85 -0.0
3,384,259 - Rru_A2936 0.85 -0.0
3,384,259 - Rru_A2936 0.85 -1.0
3,384,410 + -5.8
3,384,454 + -0.0
3,384,454 + -0.0
3,384,454 + -0.0
3,384,454 + -0.0
3,384,454 + -0.0
3,384,487 - -0.0
3,384,487 - -0.0
3,384,487 - -0.0
3,385,975 + Rru_A2937 0.80 -0.0
3,386,020 + Rru_A2937 0.82 -0.0
3,386,100 - Rru_A2937 0.87 -0.0

Or see this region's nucleotide sequence