Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2826

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2823 and Rru_A2824 are separated by 87 nucleotidesRru_A2824 and Rru_A2825 are separated by 47 nucleotidesRru_A2825 and Rru_A2826 are separated by 33 nucleotidesRru_A2826 and Rru_A2827 are separated by 165 nucleotidesRru_A2827 and Rru_A2828 are separated by 22 nucleotides Rru_A2823: Rru_A2823 - Flagellar biosynthesis protein FliQ (NCBI), at 3,257,926 to 3,258,180 _A2823 Rru_A2824: Rru_A2824 - Flagellar hook-basal body complex protein FliE (NCBI), at 3,258,268 to 3,258,588 _A2824 Rru_A2825: Rru_A2825 - Flagellar basal-body rod protein FlgC (NCBI), at 3,258,636 to 3,259,049 _A2825 Rru_A2826: Rru_A2826 - Flagellar basal-body rod protein FlgB (NCBI), at 3,259,083 to 3,259,541 _A2826 Rru_A2827: Rru_A2827 - hypothetical protein (NCBI), at 3,259,707 to 3,260,078 _A2827 Rru_A2828: Rru_A2828 - hypothetical protein (NCBI), at 3,260,101 to 3,260,610 _A2828 Position (kb) 3259 3260Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3258.296 kb on + strandat 3258.552 kb on + strand, within Rru_A2824at 3258.552 kb on + strand, within Rru_A2824at 3258.552 kb on + strand, within Rru_A2824at 3258.552 kb on + strand, within Rru_A2824at 3258.553 kb on - strand, within Rru_A2824at 3258.553 kb on - strand, within Rru_A2824at 3258.553 kb on - strand, within Rru_A2824at 3258.553 kb on - strand, within Rru_A2824at 3258.554 kb on + strand, within Rru_A2824at 3258.555 kb on - strand, within Rru_A2824at 3258.555 kb on - strand, within Rru_A2824at 3258.555 kb on - strand, within Rru_A2824at 3258.555 kb on - strand, within Rru_A2824at 3258.710 kb on - strand, within Rru_A2825at 3258.710 kb on - strand, within Rru_A2825at 3258.731 kb on + strand, within Rru_A2825at 3258.732 kb on - strand, within Rru_A2825at 3258.732 kb on - strand, within Rru_A2825at 3258.732 kb on - strand, within Rru_A2825at 3258.732 kb on - strand, within Rru_A2825at 3258.775 kb on + strand, within Rru_A2825at 3258.775 kb on + strand, within Rru_A2825at 3258.775 kb on + strand, within Rru_A2825at 3258.776 kb on - strand, within Rru_A2825at 3258.776 kb on - strand, within Rru_A2825at 3258.776 kb on - strand, within Rru_A2825at 3258.776 kb on - strand, within Rru_A2825at 3258.811 kb on + strand, within Rru_A2825at 3258.833 kb on + strand, within Rru_A2825at 3258.833 kb on + strand, within Rru_A2825at 3258.833 kb on + strand, within Rru_A2825at 3258.833 kb on + strand, within Rru_A2825at 3258.833 kb on + strand, within Rru_A2825at 3258.834 kb on - strand, within Rru_A2825at 3258.834 kb on - strand, within Rru_A2825at 3258.834 kb on - strand, within Rru_A2825at 3259.085 kb on - strandat 3259.130 kb on + strand, within Rru_A2826at 3259.130 kb on + strand, within Rru_A2826at 3259.153 kb on + strand, within Rru_A2826at 3259.153 kb on + strand, within Rru_A2826at 3259.154 kb on - strand, within Rru_A2826at 3259.154 kb on - strand, within Rru_A2826at 3259.154 kb on - strand, within Rru_A2826at 3259.154 kb on - strand, within Rru_A2826at 3259.154 kb on - strand, within Rru_A2826at 3259.229 kb on - strand, within Rru_A2826at 3259.255 kb on + strand, within Rru_A2826at 3259.284 kb on + strand, within Rru_A2826at 3259.284 kb on + strand, within Rru_A2826at 3259.285 kb on - strand, within Rru_A2826at 3259.285 kb on - strand, within Rru_A2826at 3259.378 kb on + strand, within Rru_A2826at 3259.378 kb on + strand, within Rru_A2826at 3259.382 kb on + strand, within Rru_A2826at 3259.383 kb on - strand, within Rru_A2826at 3259.383 kb on - strand, within Rru_A2826at 3259.404 kb on - strand, within Rru_A2826at 3259.404 kb on - strand, within Rru_A2826at 3259.467 kb on + strand, within Rru_A2826at 3259.566 kb on + strandat 3259.567 kb on - strandat 3259.575 kb on + strandat 3259.583 kb on + strandat 3259.583 kb on + strandat 3259.583 kb on + strandat 3259.583 kb on + strandat 3259.584 kb on - strandat 3259.584 kb on - strandat 3259.584 kb on - strandat 3259.584 kb on - strandat 3259.593 kb on + strandat 3259.593 kb on + strandat 3259.593 kb on + strandat 3259.594 kb on - strandat 3259.643 kb on + strandat 3259.670 kb on + strandat 3259.670 kb on + strandat 3259.670 kb on + strandat 3259.670 kb on + strandat 3259.670 kb on + strandat 3259.671 kb on - strandat 3259.671 kb on - strandat 3259.671 kb on - strandat 3259.673 kb on + strandat 3259.673 kb on + strandat 3259.673 kb on + strandat 3259.673 kb on + strandat 3259.673 kb on + strandat 3259.673 kb on + strandat 3259.673 kb on + strandat 3259.673 kb on + strandat 3259.806 kb on + strand, within Rru_A2827at 3259.807 kb on - strand, within Rru_A2827at 3259.807 kb on - strand, within Rru_A2827at 3259.807 kb on - strand, within Rru_A2827at 3259.807 kb on - strand, within Rru_A2827at 3259.807 kb on - strand, within Rru_A2827at 3259.807 kb on - strand, within Rru_A2827at 3260.007 kb on + strand, within Rru_A2827at 3260.007 kb on + strand, within Rru_A2827at 3260.007 kb on + strand, within Rru_A2827at 3260.007 kb on + strand, within Rru_A2827at 3260.008 kb on - strand, within Rru_A2827at 3260.008 kb on - strand, within Rru_A2827at 3260.008 kb on - strand, within Rru_A2827at 3260.008 kb on - strand, within Rru_A2827at 3260.008 kb on - strand, within Rru_A2827at 3260.013 kb on + strand, within Rru_A2827at 3260.014 kb on - strand, within Rru_A2827at 3260.491 kb on + strand, within Rru_A2828at 3260.491 kb on + strand, within Rru_A2828at 3260.492 kb on - strand, within Rru_A2828at 3260.492 kb on - strand, within Rru_A2828at 3260.492 kb on - strand, within Rru_A2828

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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3,258,296 + +0.0
3,258,552 + Rru_A2824 0.88 +0.0
3,258,552 + Rru_A2824 0.88 +0.0
3,258,552 + Rru_A2824 0.88 +0.0
3,258,552 + Rru_A2824 0.88 +0.0
3,258,553 - Rru_A2824 0.89 +0.0
3,258,553 - Rru_A2824 0.89 +0.0
3,258,553 - Rru_A2824 0.89 +0.0
3,258,553 - Rru_A2824 0.89 -1.0
3,258,554 + Rru_A2824 0.89 +0.0
3,258,555 - Rru_A2824 0.89 +0.0
3,258,555 - Rru_A2824 0.89 +0.0
3,258,555 - Rru_A2824 0.89 -2.9
3,258,555 - Rru_A2824 0.89 +0.0
3,258,710 - Rru_A2825 0.18 -2.2
3,258,710 - Rru_A2825 0.18 +0.0
3,258,731 + Rru_A2825 0.23 +0.0
3,258,732 - Rru_A2825 0.23 -2.2
3,258,732 - Rru_A2825 0.23 +0.0
3,258,732 - Rru_A2825 0.23 +0.0
3,258,732 - Rru_A2825 0.23 +0.0
3,258,775 + Rru_A2825 0.34 +0.0
3,258,775 + Rru_A2825 0.34 +0.0
3,258,775 + Rru_A2825 0.34 -1.0
3,258,776 - Rru_A2825 0.34 -2.6
3,258,776 - Rru_A2825 0.34 +0.0
3,258,776 - Rru_A2825 0.34 +0.0
3,258,776 - Rru_A2825 0.34 -2.1
3,258,811 + Rru_A2825 0.42 -1.4
3,258,833 + Rru_A2825 0.48 -3.0
3,258,833 + Rru_A2825 0.48 +0.0
3,258,833 + Rru_A2825 0.48 +0.0
3,258,833 + Rru_A2825 0.48 +0.0
3,258,833 + Rru_A2825 0.48 +0.0
3,258,834 - Rru_A2825 0.48 -3.3
3,258,834 - Rru_A2825 0.48 -2.7
3,258,834 - Rru_A2825 0.48 +0.0
3,259,085 - +0.0
3,259,130 + Rru_A2826 0.10 +0.0
3,259,130 + Rru_A2826 0.10 -3.3
3,259,153 + Rru_A2826 0.15 +0.0
3,259,153 + Rru_A2826 0.15 -2.4
3,259,154 - Rru_A2826 0.15 +0.0
3,259,154 - Rru_A2826 0.15 +0.0
3,259,154 - Rru_A2826 0.15 +0.0
3,259,154 - Rru_A2826 0.15 +0.0
3,259,154 - Rru_A2826 0.15 +0.0
3,259,229 - Rru_A2826 0.32 -2.1
3,259,255 + Rru_A2826 0.37 +0.0
3,259,284 + Rru_A2826 0.44 -2.2
3,259,284 + Rru_A2826 0.44 -3.3
3,259,285 - Rru_A2826 0.44 -4.0
3,259,285 - Rru_A2826 0.44 +0.0
3,259,378 + Rru_A2826 0.64 +0.0
3,259,378 + Rru_A2826 0.64 +0.0
3,259,382 + Rru_A2826 0.65 -2.5
3,259,383 - Rru_A2826 0.65 +0.0
3,259,383 - Rru_A2826 0.65 +0.0
3,259,404 - Rru_A2826 0.70 +0.0
3,259,404 - Rru_A2826 0.70 +0.0
3,259,467 + Rru_A2826 0.84 +0.0
3,259,566 + +0.0
3,259,567 - -0.8
3,259,575 + +0.0
3,259,583 + -1.0
3,259,583 + +0.0
3,259,583 + -3.0
3,259,583 + +0.0
3,259,584 - -2.2
3,259,584 - +0.0
3,259,584 - +0.0
3,259,584 - +0.0
3,259,593 + -1.6
3,259,593 + +0.0
3,259,593 + +0.0
3,259,594 - +0.0
3,259,643 + +0.0
3,259,670 + +0.0
3,259,670 + +0.0
3,259,670 + -1.0
3,259,670 + +0.0
3,259,670 + -2.9
3,259,671 - +0.0
3,259,671 - +0.0
3,259,671 - -2.5
3,259,673 + +0.0
3,259,673 + -2.7
3,259,673 + -2.5
3,259,673 + +0.0
3,259,673 + +0.0
3,259,673 + +0.0
3,259,673 + -2.8
3,259,673 + +0.0
3,259,806 + Rru_A2827 0.27 +0.0
3,259,807 - Rru_A2827 0.27 -3.4
3,259,807 - Rru_A2827 0.27 -2.3
3,259,807 - Rru_A2827 0.27 +0.0
3,259,807 - Rru_A2827 0.27 -2.3
3,259,807 - Rru_A2827 0.27 +0.0
3,259,807 - Rru_A2827 0.27 +0.0
3,260,007 + Rru_A2827 0.81 +0.0
3,260,007 + Rru_A2827 0.81 +0.0
3,260,007 + Rru_A2827 0.81 -2.0
3,260,007 + Rru_A2827 0.81 +0.0
3,260,008 - Rru_A2827 0.81 +0.0
3,260,008 - Rru_A2827 0.81 -2.4
3,260,008 - Rru_A2827 0.81 +0.0
3,260,008 - Rru_A2827 0.81 +0.0
3,260,008 - Rru_A2827 0.81 +0.0
3,260,013 + Rru_A2827 0.82 +0.0
3,260,014 - Rru_A2827 0.83 +0.0
3,260,491 + Rru_A2828 0.76 +0.0
3,260,491 + Rru_A2828 0.76 -1.0
3,260,492 - Rru_A2828 0.77 +0.0
3,260,492 - Rru_A2828 0.77 +0.0
3,260,492 - Rru_A2828 0.77 -2.2

Or see this region's nucleotide sequence