Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2823 and Rru_A2824 are separated by 87 nucleotides Rru_A2824 and Rru_A2825 are separated by 47 nucleotides Rru_A2825 and Rru_A2826 are separated by 33 nucleotides Rru_A2826 and Rru_A2827 are separated by 165 nucleotides Rru_A2827 and Rru_A2828 are separated by 22 nucleotides
Rru_A2823: Rru_A2823 - Flagellar biosynthesis protein FliQ (NCBI), at 3,257,926 to 3,258,180
_A2823
Rru_A2824: Rru_A2824 - Flagellar hook-basal body complex protein FliE (NCBI), at 3,258,268 to 3,258,588
_A2824
Rru_A2825: Rru_A2825 - Flagellar basal-body rod protein FlgC (NCBI), at 3,258,636 to 3,259,049
_A2825
Rru_A2826: Rru_A2826 - Flagellar basal-body rod protein FlgB (NCBI), at 3,259,083 to 3,259,541
_A2826
Rru_A2827: Rru_A2827 - hypothetical protein (NCBI), at 3,259,707 to 3,260,078
_A2827
Rru_A2828: Rru_A2828 - hypothetical protein (NCBI), at 3,260,101 to 3,260,610
_A2828
Position (kb)
3259
3260 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3258.296 kb on + strand at 3258.552 kb on + strand, within Rru_A2824 at 3258.552 kb on + strand, within Rru_A2824 at 3258.552 kb on + strand, within Rru_A2824 at 3258.552 kb on + strand, within Rru_A2824 at 3258.553 kb on - strand, within Rru_A2824 at 3258.553 kb on - strand, within Rru_A2824 at 3258.553 kb on - strand, within Rru_A2824 at 3258.553 kb on - strand, within Rru_A2824 at 3258.554 kb on + strand, within Rru_A2824 at 3258.555 kb on - strand, within Rru_A2824 at 3258.555 kb on - strand, within Rru_A2824 at 3258.555 kb on - strand, within Rru_A2824 at 3258.555 kb on - strand, within Rru_A2824 at 3258.710 kb on - strand, within Rru_A2825 at 3258.710 kb on - strand, within Rru_A2825 at 3258.731 kb on + strand, within Rru_A2825 at 3258.732 kb on - strand, within Rru_A2825 at 3258.732 kb on - strand, within Rru_A2825 at 3258.732 kb on - strand, within Rru_A2825 at 3258.732 kb on - strand, within Rru_A2825 at 3258.775 kb on + strand, within Rru_A2825 at 3258.775 kb on + strand, within Rru_A2825 at 3258.775 kb on + strand, within Rru_A2825 at 3258.776 kb on - strand, within Rru_A2825 at 3258.776 kb on - strand, within Rru_A2825 at 3258.776 kb on - strand, within Rru_A2825 at 3258.776 kb on - strand, within Rru_A2825 at 3258.811 kb on + strand, within Rru_A2825 at 3258.833 kb on + strand, within Rru_A2825 at 3258.833 kb on + strand, within Rru_A2825 at 3258.833 kb on + strand, within Rru_A2825 at 3258.833 kb on + strand, within Rru_A2825 at 3258.833 kb on + strand, within Rru_A2825 at 3258.834 kb on - strand, within Rru_A2825 at 3258.834 kb on - strand, within Rru_A2825 at 3258.834 kb on - strand, within Rru_A2825 at 3259.085 kb on - strand at 3259.130 kb on + strand, within Rru_A2826 at 3259.130 kb on + strand, within Rru_A2826 at 3259.153 kb on + strand, within Rru_A2826 at 3259.153 kb on + strand, within Rru_A2826 at 3259.154 kb on - strand, within Rru_A2826 at 3259.154 kb on - strand, within Rru_A2826 at 3259.154 kb on - strand, within Rru_A2826 at 3259.154 kb on - strand, within Rru_A2826 at 3259.154 kb on - strand, within Rru_A2826 at 3259.229 kb on - strand, within Rru_A2826 at 3259.255 kb on + strand, within Rru_A2826 at 3259.284 kb on + strand, within Rru_A2826 at 3259.284 kb on + strand, within Rru_A2826 at 3259.285 kb on - strand, within Rru_A2826 at 3259.285 kb on - strand, within Rru_A2826 at 3259.378 kb on + strand, within Rru_A2826 at 3259.378 kb on + strand, within Rru_A2826 at 3259.382 kb on + strand, within Rru_A2826 at 3259.383 kb on - strand, within Rru_A2826 at 3259.383 kb on - strand, within Rru_A2826 at 3259.404 kb on - strand, within Rru_A2826 at 3259.404 kb on - strand, within Rru_A2826 at 3259.467 kb on + strand, within Rru_A2826 at 3259.566 kb on + strand at 3259.567 kb on - strand at 3259.575 kb on + strand at 3259.583 kb on + strand at 3259.583 kb on + strand at 3259.583 kb on + strand at 3259.583 kb on + strand at 3259.584 kb on - strand at 3259.584 kb on - strand at 3259.584 kb on - strand at 3259.584 kb on - strand at 3259.593 kb on + strand at 3259.593 kb on + strand at 3259.593 kb on + strand at 3259.594 kb on - strand at 3259.643 kb on + strand at 3259.670 kb on + strand at 3259.670 kb on + strand at 3259.670 kb on + strand at 3259.670 kb on + strand at 3259.670 kb on + strand at 3259.671 kb on - strand at 3259.671 kb on - strand at 3259.671 kb on - strand at 3259.673 kb on + strand at 3259.673 kb on + strand at 3259.673 kb on + strand at 3259.673 kb on + strand at 3259.673 kb on + strand at 3259.673 kb on + strand at 3259.673 kb on + strand at 3259.673 kb on + strand at 3259.806 kb on + strand, within Rru_A2827 at 3259.807 kb on - strand, within Rru_A2827 at 3259.807 kb on - strand, within Rru_A2827 at 3259.807 kb on - strand, within Rru_A2827 at 3259.807 kb on - strand, within Rru_A2827 at 3259.807 kb on - strand, within Rru_A2827 at 3259.807 kb on - strand, within Rru_A2827 at 3260.007 kb on + strand, within Rru_A2827 at 3260.007 kb on + strand, within Rru_A2827 at 3260.007 kb on + strand, within Rru_A2827 at 3260.007 kb on + strand, within Rru_A2827 at 3260.008 kb on - strand, within Rru_A2827 at 3260.008 kb on - strand, within Rru_A2827 at 3260.008 kb on - strand, within Rru_A2827 at 3260.008 kb on - strand, within Rru_A2827 at 3260.008 kb on - strand, within Rru_A2827 at 3260.013 kb on + strand, within Rru_A2827 at 3260.014 kb on - strand, within Rru_A2827 at 3260.491 kb on + strand, within Rru_A2828 at 3260.491 kb on + strand, within Rru_A2828 at 3260.492 kb on - strand, within Rru_A2828 at 3260.492 kb on - strand, within Rru_A2828 at 3260.492 kb on - strand, within Rru_A2828
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 3,258,296 + +0.0 3,258,552 + Rru_A2824 0.88 +0.0 3,258,552 + Rru_A2824 0.88 +0.0 3,258,552 + Rru_A2824 0.88 +0.0 3,258,552 + Rru_A2824 0.88 +0.0 3,258,553 - Rru_A2824 0.89 +0.0 3,258,553 - Rru_A2824 0.89 +0.0 3,258,553 - Rru_A2824 0.89 +0.0 3,258,553 - Rru_A2824 0.89 -1.0 3,258,554 + Rru_A2824 0.89 +0.0 3,258,555 - Rru_A2824 0.89 +0.0 3,258,555 - Rru_A2824 0.89 +0.0 3,258,555 - Rru_A2824 0.89 -2.9 3,258,555 - Rru_A2824 0.89 +0.0 3,258,710 - Rru_A2825 0.18 -2.2 3,258,710 - Rru_A2825 0.18 +0.0 3,258,731 + Rru_A2825 0.23 +0.0 3,258,732 - Rru_A2825 0.23 -2.2 3,258,732 - Rru_A2825 0.23 +0.0 3,258,732 - Rru_A2825 0.23 +0.0 3,258,732 - Rru_A2825 0.23 +0.0 3,258,775 + Rru_A2825 0.34 +0.0 3,258,775 + Rru_A2825 0.34 +0.0 3,258,775 + Rru_A2825 0.34 -1.0 3,258,776 - Rru_A2825 0.34 -2.6 3,258,776 - Rru_A2825 0.34 +0.0 3,258,776 - Rru_A2825 0.34 +0.0 3,258,776 - Rru_A2825 0.34 -2.1 3,258,811 + Rru_A2825 0.42 -1.4 3,258,833 + Rru_A2825 0.48 -3.0 3,258,833 + Rru_A2825 0.48 +0.0 3,258,833 + Rru_A2825 0.48 +0.0 3,258,833 + Rru_A2825 0.48 +0.0 3,258,833 + Rru_A2825 0.48 +0.0 3,258,834 - Rru_A2825 0.48 -3.3 3,258,834 - Rru_A2825 0.48 -2.7 3,258,834 - Rru_A2825 0.48 +0.0 3,259,085 - +0.0 3,259,130 + Rru_A2826 0.10 +0.0 3,259,130 + Rru_A2826 0.10 -3.3 3,259,153 + Rru_A2826 0.15 +0.0 3,259,153 + Rru_A2826 0.15 -2.4 3,259,154 - Rru_A2826 0.15 +0.0 3,259,154 - Rru_A2826 0.15 +0.0 3,259,154 - Rru_A2826 0.15 +0.0 3,259,154 - Rru_A2826 0.15 +0.0 3,259,154 - Rru_A2826 0.15 +0.0 3,259,229 - Rru_A2826 0.32 -2.1 3,259,255 + Rru_A2826 0.37 +0.0 3,259,284 + Rru_A2826 0.44 -2.2 3,259,284 + Rru_A2826 0.44 -3.3 3,259,285 - Rru_A2826 0.44 -4.0 3,259,285 - Rru_A2826 0.44 +0.0 3,259,378 + Rru_A2826 0.64 +0.0 3,259,378 + Rru_A2826 0.64 +0.0 3,259,382 + Rru_A2826 0.65 -2.5 3,259,383 - Rru_A2826 0.65 +0.0 3,259,383 - Rru_A2826 0.65 +0.0 3,259,404 - Rru_A2826 0.70 +0.0 3,259,404 - Rru_A2826 0.70 +0.0 3,259,467 + Rru_A2826 0.84 +0.0 3,259,566 + +0.0 3,259,567 - -0.8 3,259,575 + +0.0 3,259,583 + -1.0 3,259,583 + +0.0 3,259,583 + -3.0 3,259,583 + +0.0 3,259,584 - -2.2 3,259,584 - +0.0 3,259,584 - +0.0 3,259,584 - +0.0 3,259,593 + -1.6 3,259,593 + +0.0 3,259,593 + +0.0 3,259,594 - +0.0 3,259,643 + +0.0 3,259,670 + +0.0 3,259,670 + +0.0 3,259,670 + -1.0 3,259,670 + +0.0 3,259,670 + -2.9 3,259,671 - +0.0 3,259,671 - +0.0 3,259,671 - -2.5 3,259,673 + +0.0 3,259,673 + -2.7 3,259,673 + -2.5 3,259,673 + +0.0 3,259,673 + +0.0 3,259,673 + +0.0 3,259,673 + -2.8 3,259,673 + +0.0 3,259,806 + Rru_A2827 0.27 +0.0 3,259,807 - Rru_A2827 0.27 -3.4 3,259,807 - Rru_A2827 0.27 -2.3 3,259,807 - Rru_A2827 0.27 +0.0 3,259,807 - Rru_A2827 0.27 -2.3 3,259,807 - Rru_A2827 0.27 +0.0 3,259,807 - Rru_A2827 0.27 +0.0 3,260,007 + Rru_A2827 0.81 +0.0 3,260,007 + Rru_A2827 0.81 +0.0 3,260,007 + Rru_A2827 0.81 -2.0 3,260,007 + Rru_A2827 0.81 +0.0 3,260,008 - Rru_A2827 0.81 +0.0 3,260,008 - Rru_A2827 0.81 -2.4 3,260,008 - Rru_A2827 0.81 +0.0 3,260,008 - Rru_A2827 0.81 +0.0 3,260,008 - Rru_A2827 0.81 +0.0 3,260,013 + Rru_A2827 0.82 +0.0 3,260,014 - Rru_A2827 0.83 +0.0 3,260,491 + Rru_A2828 0.76 +0.0 3,260,491 + Rru_A2828 0.76 -1.0 3,260,492 - Rru_A2828 0.77 +0.0 3,260,492 - Rru_A2828 0.77 +0.0 3,260,492 - Rru_A2828 0.77 -2.2
Or see this region's nucleotide sequence