Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2781

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2779 and Rru_A2780 are separated by 108 nucleotidesRru_A2780 and Rru_A2781 are separated by 12 nucleotidesRru_A2781 and Rru_A2782 are separated by 131 nucleotides Rru_A2779: Rru_A2779 - Plasmid maintenance system antidote protein (NCBI), at 3,213,075 to 3,213,407 _A2779 Rru_A2780: Rru_A2780 - hypothetical protein (NCBI), at 3,213,516 to 3,214,346 _A2780 Rru_A2781: Rru_A2781 - Protein of unknown function UPF0261 (NCBI), at 3,214,359 to 3,215,579 _A2781 Rru_A2782: Rru_A2782 - Transcriptional Regulator, LysR family (NCBI), at 3,215,711 to 3,216,616 _A2782 Position (kb) 3214 3215 3216Strain fitness (log2 ratio) -3 -2 -1 0 1at 3213.447 kb on + strandat 3213.598 kb on + strandat 3213.598 kb on + strandat 3213.598 kb on + strandat 3213.599 kb on - strand, within Rru_A2780at 3213.599 kb on - strand, within Rru_A2780at 3213.599 kb on - strand, within Rru_A2780at 3213.862 kb on + strand, within Rru_A2780at 3213.862 kb on + strand, within Rru_A2780at 3213.862 kb on + strand, within Rru_A2780at 3213.863 kb on - strand, within Rru_A2780at 3213.863 kb on - strand, within Rru_A2780at 3213.863 kb on - strand, within Rru_A2780at 3213.863 kb on - strand, within Rru_A2780at 3214.203 kb on - strand, within Rru_A2780at 3214.204 kb on + strand, within Rru_A2780at 3214.205 kb on - strand, within Rru_A2780at 3214.346 kb on + strandat 3214.346 kb on + strandat 3214.346 kb on + strandat 3214.346 kb on + strandat 3214.347 kb on - strandat 3214.361 kb on - strandat 3214.682 kb on + strand, within Rru_A2781at 3214.690 kb on + strand, within Rru_A2781at 3214.691 kb on - strand, within Rru_A2781at 3214.708 kb on + strand, within Rru_A2781at 3214.708 kb on + strand, within Rru_A2781at 3214.708 kb on + strand, within Rru_A2781at 3214.709 kb on - strand, within Rru_A2781at 3214.774 kb on + strand, within Rru_A2781at 3214.774 kb on + strand, within Rru_A2781at 3214.775 kb on - strand, within Rru_A2781at 3214.957 kb on + strand, within Rru_A2781at 3214.957 kb on + strand, within Rru_A2781at 3214.958 kb on - strand, within Rru_A2781at 3215.182 kb on + strand, within Rru_A2781at 3215.183 kb on - strand, within Rru_A2781at 3215.183 kb on - strand, within Rru_A2781at 3215.329 kb on + strand, within Rru_A2781at 3215.329 kb on + strand, within Rru_A2781at 3215.329 kb on + strand, within Rru_A2781at 3215.329 kb on + strand, within Rru_A2781at 3215.330 kb on - strand, within Rru_A2781at 3215.521 kb on + strandat 3215.521 kb on + strandat 3215.522 kb on - strandat 3215.522 kb on - strandat 3215.522 kb on - strandat 3215.562 kb on - strandat 3215.563 kb on + strandat 3215.563 kb on + strandat 3215.563 kb on + strandat 3215.563 kb on + strandat 3215.564 kb on - strandat 3215.564 kb on - strandat 3215.625 kb on + strandat 3215.625 kb on + strandat 3215.626 kb on - strandat 3215.626 kb on - strandat 3215.626 kb on - strandat 3215.650 kb on + strandat 3215.650 kb on + strandat 3215.650 kb on + strandat 3215.651 kb on - strandat 3215.656 kb on - strandat 3215.749 kb on + strandat 3215.883 kb on + strand, within Rru_A2782at 3215.883 kb on + strand, within Rru_A2782at 3215.883 kb on + strand, within Rru_A2782at 3215.883 kb on + strand, within Rru_A2782at 3215.883 kb on + strand, within Rru_A2782at 3215.883 kb on + strand, within Rru_A2782at 3215.883 kb on + strand, within Rru_A2782at 3215.884 kb on - strand, within Rru_A2782at 3215.884 kb on - strand, within Rru_A2782at 3216.119 kb on + strand, within Rru_A2782at 3216.172 kb on + strand, within Rru_A2782at 3216.172 kb on + strand, within Rru_A2782at 3216.172 kb on + strand, within Rru_A2782at 3216.172 kb on + strand, within Rru_A2782at 3216.173 kb on - strand, within Rru_A2782at 3216.247 kb on - strand, within Rru_A2782at 3216.247 kb on - strand, within Rru_A2782at 3216.247 kb on - strand, within Rru_A2782at 3216.247 kb on - strand, within Rru_A2782at 3216.291 kb on + strand, within Rru_A2782at 3216.291 kb on + strand, within Rru_A2782at 3216.292 kb on - strand, within Rru_A2782at 3216.292 kb on - strand, within Rru_A2782at 3216.303 kb on + strand, within Rru_A2782

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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3,213,447 + +0.0
3,213,598 + +0.0
3,213,598 + +0.0
3,213,598 + +0.0
3,213,599 - Rru_A2780 0.10 -1.6
3,213,599 - Rru_A2780 0.10 +0.0
3,213,599 - Rru_A2780 0.10 -2.0
3,213,862 + Rru_A2780 0.42 +0.0
3,213,862 + Rru_A2780 0.42 +0.0
3,213,862 + Rru_A2780 0.42 +0.0
3,213,863 - Rru_A2780 0.42 +0.0
3,213,863 - Rru_A2780 0.42 +0.0
3,213,863 - Rru_A2780 0.42 -2.7
3,213,863 - Rru_A2780 0.42 -3.4
3,214,203 - Rru_A2780 0.83 -2.2
3,214,204 + Rru_A2780 0.83 -1.8
3,214,205 - Rru_A2780 0.83 +0.0
3,214,346 + +0.0
3,214,346 + +0.0
3,214,346 + +0.0
3,214,346 + +0.0
3,214,347 - +0.0
3,214,361 - +0.0
3,214,682 + Rru_A2781 0.26 +0.0
3,214,690 + Rru_A2781 0.27 -2.1
3,214,691 - Rru_A2781 0.27 -2.4
3,214,708 + Rru_A2781 0.29 -2.3
3,214,708 + Rru_A2781 0.29 +0.0
3,214,708 + Rru_A2781 0.29 +0.0
3,214,709 - Rru_A2781 0.29 +0.0
3,214,774 + Rru_A2781 0.34 -2.7
3,214,774 + Rru_A2781 0.34 +0.0
3,214,775 - Rru_A2781 0.34 -2.9
3,214,957 + Rru_A2781 0.49 +0.0
3,214,957 + Rru_A2781 0.49 +0.0
3,214,958 - Rru_A2781 0.49 +0.0
3,215,182 + Rru_A2781 0.67 -2.6
3,215,183 - Rru_A2781 0.67 +0.0
3,215,183 - Rru_A2781 0.67 -3.1
3,215,329 + Rru_A2781 0.79 +0.0
3,215,329 + Rru_A2781 0.79 -1.3
3,215,329 + Rru_A2781 0.79 +0.0
3,215,329 + Rru_A2781 0.79 +0.0
3,215,330 - Rru_A2781 0.80 -2.9
3,215,521 + +0.0
3,215,521 + +0.0
3,215,522 - -2.3
3,215,522 - +0.0
3,215,522 - +0.0
3,215,562 - +0.0
3,215,563 + +0.0
3,215,563 + +0.0
3,215,563 + +0.0
3,215,563 + +0.0
3,215,564 - -2.5
3,215,564 - +0.0
3,215,625 + -2.1
3,215,625 + +0.0
3,215,626 - +0.0
3,215,626 - +0.0
3,215,626 - +0.0
3,215,650 + +0.0
3,215,650 + +0.0
3,215,650 + +0.0
3,215,651 - +0.0
3,215,656 - +0.0
3,215,749 + +0.0
3,215,883 + Rru_A2782 0.19 -2.7
3,215,883 + Rru_A2782 0.19 +0.0
3,215,883 + Rru_A2782 0.19 -2.5
3,215,883 + Rru_A2782 0.19 +0.0
3,215,883 + Rru_A2782 0.19 +0.0
3,215,883 + Rru_A2782 0.19 -0.7
3,215,883 + Rru_A2782 0.19 -1.9
3,215,884 - Rru_A2782 0.19 +0.0
3,215,884 - Rru_A2782 0.19 -1.5
3,216,119 + Rru_A2782 0.45 +0.0
3,216,172 + Rru_A2782 0.51 -2.2
3,216,172 + Rru_A2782 0.51 -2.0
3,216,172 + Rru_A2782 0.51 +0.0
3,216,172 + Rru_A2782 0.51 +0.0
3,216,173 - Rru_A2782 0.51 +0.0
3,216,247 - Rru_A2782 0.59 +0.0
3,216,247 - Rru_A2782 0.59 -2.0
3,216,247 - Rru_A2782 0.59 -2.3
3,216,247 - Rru_A2782 0.59 +0.0
3,216,291 + Rru_A2782 0.64 +0.0
3,216,291 + Rru_A2782 0.64 +0.0
3,216,292 - Rru_A2782 0.64 -2.0
3,216,292 - Rru_A2782 0.64 +0.0
3,216,303 + Rru_A2782 0.65 +0.0

Or see this region's nucleotide sequence