Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2710 and Rru_A2711 are separated by 19 nucleotides Rru_A2711 and Rru_A2712 overlap by 16 nucleotides Rru_A2712 and Rru_A2713 are separated by 17 nucleotides
Rru_A2710: Rru_A2710 - Gram negative topoisomerase IV, subunit B (NCBI), at 3,131,976 to 3,133,973
_A2710
Rru_A2711: Rru_A2711 - GCN5-related N-acetyltransferase (NCBI), at 3,133,993 to 3,134,505
_A2711
Rru_A2712: Rru_A2712 - Transcriptional Regulator, TetR family (NCBI), at 3,134,490 to 3,135,110
_A2712
Rru_A2713: Rru_A2713 - hypothetical protein (NCBI), at 3,135,128 to 3,135,394
_A2713
Position (kb) 3133
3134
3135 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3133.994 kb on + strand at 3133.994 kb on + strand at 3133.994 kb on + strand at 3133.994 kb on + strand at 3133.995 kb on - strand at 3133.995 kb on - strand at 3133.995 kb on - strand at 3133.995 kb on - strand at 3134.081 kb on + strand, within Rru_A2711 at 3134.082 kb on - strand, within Rru_A2711 at 3134.082 kb on - strand, within Rru_A2711 at 3134.082 kb on - strand, within Rru_A2711 at 3134.128 kb on + strand, within Rru_A2711 at 3134.128 kb on + strand, within Rru_A2711 at 3134.129 kb on - strand, within Rru_A2711 at 3134.129 kb on - strand, within Rru_A2711 at 3134.360 kb on + strand, within Rru_A2711 at 3134.361 kb on - strand, within Rru_A2711 at 3134.372 kb on + strand, within Rru_A2711 at 3134.373 kb on - strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.984 kb on - strand, within Rru_A2712 at 3134.984 kb on - strand, within Rru_A2712 at 3135.124 kb on - strand at 3135.124 kb on - strand at 3135.124 kb on - strand at 3135.193 kb on - strand, within Rru_A2713 at 3135.352 kb on + strand, within Rru_A2713
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 3,133,994 + +0.0 3,133,994 + +0.0 3,133,994 + +0.0 3,133,994 + -2.1 3,133,995 - +0.0 3,133,995 - +0.0 3,133,995 - -1.9 3,133,995 - +0.0 3,134,081 + Rru_A2711 0.17 -3.4 3,134,082 - Rru_A2711 0.17 +0.0 3,134,082 - Rru_A2711 0.17 +0.0 3,134,082 - Rru_A2711 0.17 +0.0 3,134,128 + Rru_A2711 0.26 +0.0 3,134,128 + Rru_A2711 0.26 -1.2 3,134,129 - Rru_A2711 0.27 +0.0 3,134,129 - Rru_A2711 0.27 -2.0 3,134,360 + Rru_A2711 0.72 +0.0 3,134,361 - Rru_A2711 0.72 +0.0 3,134,372 + Rru_A2711 0.74 -3.3 3,134,373 - Rru_A2711 0.74 +0.0 3,134,375 + Rru_A2711 0.74 +0.0 3,134,375 + Rru_A2711 0.74 +0.0 3,134,375 + Rru_A2711 0.74 +0.0 3,134,375 + Rru_A2711 0.74 +0.0 3,134,376 - Rru_A2711 0.75 -2.5 3,134,376 - Rru_A2711 0.75 -1.6 3,134,376 - Rru_A2711 0.75 +0.0 3,134,376 - Rru_A2711 0.75 +0.0 3,134,984 - Rru_A2712 0.80 +0.0 3,134,984 - Rru_A2712 0.80 +0.0 3,135,124 - -1.0 3,135,124 - +0.0 3,135,124 - +0.0 3,135,193 - Rru_A2713 0.24 -2.0 3,135,352 + Rru_A2713 0.84 +0.0
Or see this region's nucleotide sequence