Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2395 and Rru_A2396 are separated by 135 nucleotides Rru_A2396 and Rru_A2397 are separated by 95 nucleotides
Rru_A2395: Rru_A2395 - TonB-dependent siderophore receptor (NCBI), at 2,784,559 to 2,786,997
_A2395
Rru_A2396: Rru_A2396 - Putative FecR (NCBI), at 2,787,133 to 2,788,128
_A2396
Rru_A2397: Rru_A2397 - Sigma-24 (FecI) (NCBI), at 2,788,224 to 2,788,763
_A2397
Position (kb)
2787
2788
2789 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2786.190 kb on + strand, within Rru_A2395 at 2786.190 kb on + strand, within Rru_A2395 at 2786.223 kb on - strand, within Rru_A2395 at 2786.270 kb on + strand, within Rru_A2395 at 2786.270 kb on + strand, within Rru_A2395 at 2786.271 kb on - strand, within Rru_A2395 at 2786.271 kb on - strand, within Rru_A2395 at 2786.271 kb on - strand, within Rru_A2395 at 2786.271 kb on - strand, within Rru_A2395 at 2786.324 kb on + strand, within Rru_A2395 at 2786.324 kb on + strand, within Rru_A2395 at 2786.324 kb on + strand, within Rru_A2395 at 2786.324 kb on + strand, within Rru_A2395 at 2786.324 kb on + strand, within Rru_A2395 at 2786.324 kb on + strand, within Rru_A2395 at 2786.325 kb on - strand, within Rru_A2395 at 2786.370 kb on - strand, within Rru_A2395 at 2786.370 kb on - strand, within Rru_A2395 at 2786.414 kb on + strand, within Rru_A2395 at 2786.414 kb on + strand, within Rru_A2395 at 2786.415 kb on - strand, within Rru_A2395 at 2786.844 kb on + strand at 2786.845 kb on - strand at 2786.845 kb on - strand at 2787.022 kb on + strand at 2787.023 kb on - strand at 2787.674 kb on + strand, within Rru_A2396 at 2787.675 kb on - strand, within Rru_A2396 at 2787.675 kb on - strand, within Rru_A2396 at 2787.675 kb on - strand, within Rru_A2396 at 2788.105 kb on - strand at 2788.281 kb on + strand, within Rru_A2397 at 2788.281 kb on + strand, within Rru_A2397 at 2788.281 kb on + strand, within Rru_A2397 at 2788.281 kb on + strand, within Rru_A2397 at 2788.282 kb on - strand, within Rru_A2397 at 2788.282 kb on - strand, within Rru_A2397 at 2788.282 kb on - strand, within Rru_A2397 at 2788.558 kb on + strand, within Rru_A2397 at 2788.558 kb on + strand, within Rru_A2397 at 2788.558 kb on + strand, within Rru_A2397 at 2788.558 kb on + strand, within Rru_A2397 at 2788.559 kb on - strand, within Rru_A2397 at 2788.559 kb on - strand, within Rru_A2397 at 2788.559 kb on - strand, within Rru_A2397 at 2788.559 kb on - strand, within Rru_A2397 at 2788.559 kb on - strand, within Rru_A2397 at 2788.559 kb on - strand, within Rru_A2397 at 2788.560 kb on + strand, within Rru_A2397 at 2788.560 kb on + strand, within Rru_A2397 at 2788.561 kb on - strand, within Rru_A2397 at 2788.561 kb on - strand, within Rru_A2397 at 2788.702 kb on + strand, within Rru_A2397 at 2788.703 kb on - strand, within Rru_A2397 at 2788.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 2,786,190 + Rru_A2395 0.67 -1.9 2,786,190 + Rru_A2395 0.67 +0.0 2,786,223 - Rru_A2395 0.68 +0.0 2,786,270 + Rru_A2395 0.70 -2.3 2,786,270 + Rru_A2395 0.70 +0.0 2,786,271 - Rru_A2395 0.70 +0.0 2,786,271 - Rru_A2395 0.70 +0.0 2,786,271 - Rru_A2395 0.70 +0.0 2,786,271 - Rru_A2395 0.70 -2.4 2,786,324 + Rru_A2395 0.72 +0.0 2,786,324 + Rru_A2395 0.72 -3.3 2,786,324 + Rru_A2395 0.72 +0.0 2,786,324 + Rru_A2395 0.72 +0.0 2,786,324 + Rru_A2395 0.72 +0.0 2,786,324 + Rru_A2395 0.72 +0.0 2,786,325 - Rru_A2395 0.72 +0.0 2,786,370 - Rru_A2395 0.74 +0.9 2,786,370 - Rru_A2395 0.74 -2.1 2,786,414 + Rru_A2395 0.76 -2.2 2,786,414 + Rru_A2395 0.76 -1.6 2,786,415 - Rru_A2395 0.76 -1.1 2,786,844 + -2.2 2,786,845 - -2.8 2,786,845 - -2.9 2,787,022 + -2.4 2,787,023 - +0.0 2,787,674 + Rru_A2396 0.54 -1.0 2,787,675 - Rru_A2396 0.54 +0.0 2,787,675 - Rru_A2396 0.54 +0.0 2,787,675 - Rru_A2396 0.54 -3.0 2,788,105 - -1.0 2,788,281 + Rru_A2397 0.11 +0.0 2,788,281 + Rru_A2397 0.11 +0.0 2,788,281 + Rru_A2397 0.11 +0.0 2,788,281 + Rru_A2397 0.11 -2.4 2,788,282 - Rru_A2397 0.11 +0.0 2,788,282 - Rru_A2397 0.11 +0.0 2,788,282 - Rru_A2397 0.11 +0.0 2,788,558 + Rru_A2397 0.62 +0.0 2,788,558 + Rru_A2397 0.62 -1.2 2,788,558 + Rru_A2397 0.62 +0.0 2,788,558 + Rru_A2397 0.62 +0.0 2,788,559 - Rru_A2397 0.62 -2.1 2,788,559 - Rru_A2397 0.62 -1.8 2,788,559 - Rru_A2397 0.62 +0.0 2,788,559 - Rru_A2397 0.62 +0.0 2,788,559 - Rru_A2397 0.62 +0.0 2,788,559 - Rru_A2397 0.62 -2.4 2,788,560 + Rru_A2397 0.62 +0.0 2,788,560 + Rru_A2397 0.62 +0.0 2,788,561 - Rru_A2397 0.62 +0.0 2,788,561 - Rru_A2397 0.62 -1.0 2,788,702 + Rru_A2397 0.89 -2.4 2,788,703 - Rru_A2397 0.89 +0.0 2,788,823 - +0.0
Or see this region's nucleotide sequence