Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2396

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2395 and Rru_A2396 are separated by 135 nucleotidesRru_A2396 and Rru_A2397 are separated by 95 nucleotides Rru_A2395: Rru_A2395 - TonB-dependent siderophore receptor (NCBI), at 2,784,559 to 2,786,997 _A2395 Rru_A2396: Rru_A2396 - Putative FecR (NCBI), at 2,787,133 to 2,788,128 _A2396 Rru_A2397: Rru_A2397 - Sigma-24 (FecI) (NCBI), at 2,788,224 to 2,788,763 _A2397 Position (kb) 2787 2788 2789Strain fitness (log2 ratio) -3 -2 -1 0 1at 2786.190 kb on + strand, within Rru_A2395at 2786.190 kb on + strand, within Rru_A2395at 2786.223 kb on - strand, within Rru_A2395at 2786.270 kb on + strand, within Rru_A2395at 2786.270 kb on + strand, within Rru_A2395at 2786.271 kb on - strand, within Rru_A2395at 2786.271 kb on - strand, within Rru_A2395at 2786.271 kb on - strand, within Rru_A2395at 2786.271 kb on - strand, within Rru_A2395at 2786.324 kb on + strand, within Rru_A2395at 2786.324 kb on + strand, within Rru_A2395at 2786.324 kb on + strand, within Rru_A2395at 2786.324 kb on + strand, within Rru_A2395at 2786.324 kb on + strand, within Rru_A2395at 2786.324 kb on + strand, within Rru_A2395at 2786.325 kb on - strand, within Rru_A2395at 2786.370 kb on - strand, within Rru_A2395at 2786.370 kb on - strand, within Rru_A2395at 2786.414 kb on + strand, within Rru_A2395at 2786.414 kb on + strand, within Rru_A2395at 2786.415 kb on - strand, within Rru_A2395at 2786.844 kb on + strandat 2786.845 kb on - strandat 2786.845 kb on - strandat 2787.022 kb on + strandat 2787.023 kb on - strandat 2787.674 kb on + strand, within Rru_A2396at 2787.675 kb on - strand, within Rru_A2396at 2787.675 kb on - strand, within Rru_A2396at 2787.675 kb on - strand, within Rru_A2396at 2788.105 kb on - strandat 2788.281 kb on + strand, within Rru_A2397at 2788.281 kb on + strand, within Rru_A2397at 2788.281 kb on + strand, within Rru_A2397at 2788.281 kb on + strand, within Rru_A2397at 2788.282 kb on - strand, within Rru_A2397at 2788.282 kb on - strand, within Rru_A2397at 2788.282 kb on - strand, within Rru_A2397at 2788.558 kb on + strand, within Rru_A2397at 2788.558 kb on + strand, within Rru_A2397at 2788.558 kb on + strand, within Rru_A2397at 2788.558 kb on + strand, within Rru_A2397at 2788.559 kb on - strand, within Rru_A2397at 2788.559 kb on - strand, within Rru_A2397at 2788.559 kb on - strand, within Rru_A2397at 2788.559 kb on - strand, within Rru_A2397at 2788.559 kb on - strand, within Rru_A2397at 2788.559 kb on - strand, within Rru_A2397at 2788.560 kb on + strand, within Rru_A2397at 2788.560 kb on + strand, within Rru_A2397at 2788.561 kb on - strand, within Rru_A2397at 2788.561 kb on - strand, within Rru_A2397at 2788.702 kb on + strand, within Rru_A2397at 2788.703 kb on - strand, within Rru_A2397at 2788.823 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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2,786,190 + Rru_A2395 0.67 -1.9
2,786,190 + Rru_A2395 0.67 +0.0
2,786,223 - Rru_A2395 0.68 +0.0
2,786,270 + Rru_A2395 0.70 -2.3
2,786,270 + Rru_A2395 0.70 +0.0
2,786,271 - Rru_A2395 0.70 +0.0
2,786,271 - Rru_A2395 0.70 +0.0
2,786,271 - Rru_A2395 0.70 +0.0
2,786,271 - Rru_A2395 0.70 -2.4
2,786,324 + Rru_A2395 0.72 +0.0
2,786,324 + Rru_A2395 0.72 -3.3
2,786,324 + Rru_A2395 0.72 +0.0
2,786,324 + Rru_A2395 0.72 +0.0
2,786,324 + Rru_A2395 0.72 +0.0
2,786,324 + Rru_A2395 0.72 +0.0
2,786,325 - Rru_A2395 0.72 +0.0
2,786,370 - Rru_A2395 0.74 +0.9
2,786,370 - Rru_A2395 0.74 -2.1
2,786,414 + Rru_A2395 0.76 -2.2
2,786,414 + Rru_A2395 0.76 -1.6
2,786,415 - Rru_A2395 0.76 -1.1
2,786,844 + -2.2
2,786,845 - -2.8
2,786,845 - -2.9
2,787,022 + -2.4
2,787,023 - +0.0
2,787,674 + Rru_A2396 0.54 -1.0
2,787,675 - Rru_A2396 0.54 +0.0
2,787,675 - Rru_A2396 0.54 +0.0
2,787,675 - Rru_A2396 0.54 -3.0
2,788,105 - -1.0
2,788,281 + Rru_A2397 0.11 +0.0
2,788,281 + Rru_A2397 0.11 +0.0
2,788,281 + Rru_A2397 0.11 +0.0
2,788,281 + Rru_A2397 0.11 -2.4
2,788,282 - Rru_A2397 0.11 +0.0
2,788,282 - Rru_A2397 0.11 +0.0
2,788,282 - Rru_A2397 0.11 +0.0
2,788,558 + Rru_A2397 0.62 +0.0
2,788,558 + Rru_A2397 0.62 -1.2
2,788,558 + Rru_A2397 0.62 +0.0
2,788,558 + Rru_A2397 0.62 +0.0
2,788,559 - Rru_A2397 0.62 -2.1
2,788,559 - Rru_A2397 0.62 -1.8
2,788,559 - Rru_A2397 0.62 +0.0
2,788,559 - Rru_A2397 0.62 +0.0
2,788,559 - Rru_A2397 0.62 +0.0
2,788,559 - Rru_A2397 0.62 -2.4
2,788,560 + Rru_A2397 0.62 +0.0
2,788,560 + Rru_A2397 0.62 +0.0
2,788,561 - Rru_A2397 0.62 +0.0
2,788,561 - Rru_A2397 0.62 -1.0
2,788,702 + Rru_A2397 0.89 -2.4
2,788,703 - Rru_A2397 0.89 +0.0
2,788,823 - +0.0

Or see this region's nucleotide sequence