Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2381

Experiment: L-Malic Acid (C) with ammonium chloride; no light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2380 and Rru_A2381 are separated by 47 nucleotidesRru_A2381 and Rru_A2382 are separated by 39 nucleotidesRru_A2382 and Rru_A2383 overlap by 4 nucleotides Rru_A2380: Rru_A2380 - Major facilitator superfamily MFS_1 (NCBI), at 2,772,010 to 2,773,221 _A2380 Rru_A2381: Rru_A2381 - lipocalin-like protein (NCBI), at 2,773,269 to 2,773,874 _A2381 Rru_A2382: Rru_A2382 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,773,914 to 2,774,696 _A2382 Rru_A2383: Rru_A2383 - ABC transporter component (NCBI), at 2,774,693 to 2,775,694 _A2383 Position (kb) 2773 2774Strain fitness (log2 ratio) -2 -1 0 1at 2772.542 kb on + strand, within Rru_A2380at 2772.543 kb on - strand, within Rru_A2380at 2772.543 kb on - strand, within Rru_A2380at 2772.543 kb on - strand, within Rru_A2380at 2772.543 kb on - strand, within Rru_A2380at 2772.927 kb on + strand, within Rru_A2380at 2772.927 kb on + strand, within Rru_A2380at 2772.927 kb on + strand, within Rru_A2380at 2772.928 kb on - strand, within Rru_A2380at 2772.928 kb on - strand, within Rru_A2380at 2773.087 kb on + strand, within Rru_A2380at 2773.088 kb on - strand, within Rru_A2380at 2773.088 kb on - strand, within Rru_A2380at 2773.088 kb on - strand, within Rru_A2380at 2773.088 kb on - strand, within Rru_A2380at 2773.418 kb on - strand, within Rru_A2381at 2773.448 kb on - strand, within Rru_A2381at 2773.483 kb on + strand, within Rru_A2381at 2773.555 kb on + strand, within Rru_A2381at 2773.594 kb on + strand, within Rru_A2381at 2773.595 kb on - strand, within Rru_A2381at 2773.595 kb on - strand, within Rru_A2381at 2773.639 kb on + strand, within Rru_A2381at 2773.639 kb on + strand, within Rru_A2381at 2773.640 kb on - strand, within Rru_A2381at 2773.714 kb on + strand, within Rru_A2381at 2773.715 kb on - strand, within Rru_A2381at 2773.715 kb on - strand, within Rru_A2381at 2773.715 kb on - strand, within Rru_A2381at 2773.767 kb on - strand, within Rru_A2381at 2774.560 kb on + strand, within Rru_A2382at 2774.560 kb on + strand, within Rru_A2382at 2774.560 kb on + strand, within Rru_A2382at 2774.561 kb on - strand, within Rru_A2382at 2774.561 kb on - strand, within Rru_A2382

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
remove
2,772,542 + Rru_A2380 0.44 -2.0
2,772,543 - Rru_A2380 0.44 +0.0
2,772,543 - Rru_A2380 0.44 -1.7
2,772,543 - Rru_A2380 0.44 -2.0
2,772,543 - Rru_A2380 0.44 -2.1
2,772,927 + Rru_A2380 0.76 -1.9
2,772,927 + Rru_A2380 0.76 -1.9
2,772,927 + Rru_A2380 0.76 +0.0
2,772,928 - Rru_A2380 0.76 +0.0
2,772,928 - Rru_A2380 0.76 -2.1
2,773,087 + Rru_A2380 0.89 -1.8
2,773,088 - Rru_A2380 0.89 +0.0
2,773,088 - Rru_A2380 0.89 +0.0
2,773,088 - Rru_A2380 0.89 +0.0
2,773,088 - Rru_A2380 0.89 -1.8
2,773,418 - Rru_A2381 0.25 +0.0
2,773,448 - Rru_A2381 0.30 +0.0
2,773,483 + Rru_A2381 0.35 -2.2
2,773,555 + Rru_A2381 0.47 +0.0
2,773,594 + Rru_A2381 0.54 +0.0
2,773,595 - Rru_A2381 0.54 +0.0
2,773,595 - Rru_A2381 0.54 +0.0
2,773,639 + Rru_A2381 0.61 -2.7
2,773,639 + Rru_A2381 0.61 -1.1
2,773,640 - Rru_A2381 0.61 +0.0
2,773,714 + Rru_A2381 0.73 +0.0
2,773,715 - Rru_A2381 0.74 -1.7
2,773,715 - Rru_A2381 0.74 -1.9
2,773,715 - Rru_A2381 0.74 -2.3
2,773,767 - Rru_A2381 0.82 +0.0
2,774,560 + Rru_A2382 0.83 -2.7
2,774,560 + Rru_A2382 0.83 -1.0
2,774,560 + Rru_A2382 0.83 +0.0
2,774,561 - Rru_A2382 0.83 +0.0
2,774,561 - Rru_A2382 0.83 +0.0

Or see this region's nucleotide sequence