Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2199

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2197 and Rru_A2198 are separated by 161 nucleotidesRru_A2198 and Rru_A2199 are separated by 96 nucleotidesRru_A2199 and Rru_A2200 are separated by 131 nucleotidesRru_A2200 and Rru_A2201 are separated by 101 nucleotides Rru_A2197: Rru_A2197 - 3,4-Dihydroxy-2-butanone 4-phosphate synthase (NCBI), at 2,551,477 to 2,552,121 _A2197 Rru_A2198: Rru_A2198 - Protein of unknown function UPF0066 (NCBI), at 2,552,283 to 2,552,774 _A2198 Rru_A2199: Rru_A2199 - hypothetical protein (NCBI), at 2,552,871 to 2,554,577 _A2199 Rru_A2200: Rru_A2200 - DNA polymerase III chi subunit, HolC (NCBI), at 2,554,709 to 2,555,191 _A2200 Rru_A2201: Rru_A2201 - Peptidase S1C, Do (NCBI), at 2,555,293 to 2,556,819 _A2201 Position (kb) 2552 2553 2554 2555Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2552.200 kb on + strandat 2552.222 kb on - strandat 2552.232 kb on + strandat 2552.233 kb on - strandat 2552.233 kb on - strandat 2552.285 kb on - strandat 2552.323 kb on + strandat 2552.323 kb on + strandat 2552.323 kb on + strandat 2552.323 kb on + strandat 2552.324 kb on - strandat 2552.324 kb on - strandat 2552.324 kb on - strandat 2552.324 kb on - strandat 2552.324 kb on - strandat 2552.324 kb on - strandat 2552.324 kb on - strandat 2552.326 kb on + strandat 2552.326 kb on + strandat 2552.327 kb on - strandat 2552.539 kb on + strand, within Rru_A2198at 2552.539 kb on + strand, within Rru_A2198at 2552.539 kb on + strand, within Rru_A2198at 2552.540 kb on - strand, within Rru_A2198at 2552.699 kb on + strand, within Rru_A2198at 2552.820 kb on - strandat 2552.906 kb on - strandat 2553.373 kb on + strand, within Rru_A2199at 2553.373 kb on + strand, within Rru_A2199at 2553.374 kb on - strand, within Rru_A2199at 2554.090 kb on + strand, within Rru_A2199at 2554.090 kb on + strand, within Rru_A2199at 2554.090 kb on + strand, within Rru_A2199at 2554.090 kb on + strand, within Rru_A2199at 2554.091 kb on - strand, within Rru_A2199at 2554.091 kb on - strand, within Rru_A2199at 2554.091 kb on - strand, within Rru_A2199at 2554.091 kb on - strand, within Rru_A2199at 2554.091 kb on - strand, within Rru_A2199at 2554.261 kb on + strand, within Rru_A2199at 2554.262 kb on - strand, within Rru_A2199at 2554.262 kb on - strand, within Rru_A2199at 2554.306 kb on + strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.477 kb on + strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.519 kb on + strandat 2554.568 kb on - strandat 2554.568 kb on - strandat 2554.584 kb on - strandat 2554.615 kb on + strandat 2554.616 kb on - strandat 2554.629 kb on + strandat 2554.630 kb on - strandat 2554.665 kb on - strandat 2554.666 kb on + strandat 2554.666 kb on + strandat 2554.667 kb on - strandat 2554.667 kb on - strandat 2554.685 kb on + strandat 2554.685 kb on + strandat 2554.685 kb on + strandat 2554.710 kb on + strandat 2554.717 kb on + strandat 2554.718 kb on - strandat 2554.718 kb on - strandat 2554.785 kb on + strand, within Rru_A2200at 2554.785 kb on + strand, within Rru_A2200at 2554.785 kb on + strand, within Rru_A2200at 2554.786 kb on - strand, within Rru_A2200at 2555.165 kb on + strandat 2555.165 kb on + strandat 2555.172 kb on + strandat 2555.173 kb on - strandat 2555.202 kb on + strandat 2555.202 kb on + strandat 2555.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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2,552,200 + -2.0
2,552,222 - +0.0
2,552,232 + +0.0
2,552,233 - +0.0
2,552,233 - +0.0
2,552,285 - -2.6
2,552,323 + +0.0
2,552,323 + +0.0
2,552,323 + +0.0
2,552,323 + -2.4
2,552,324 - -2.4
2,552,324 - +0.0
2,552,324 - +0.0
2,552,324 - +0.0
2,552,324 - +0.0
2,552,324 - +0.0
2,552,324 - -2.2
2,552,326 + +0.0
2,552,326 + +0.0
2,552,327 - +0.0
2,552,539 + Rru_A2198 0.52 -0.4
2,552,539 + Rru_A2198 0.52 +0.0
2,552,539 + Rru_A2198 0.52 -2.9
2,552,540 - Rru_A2198 0.52 +0.0
2,552,699 + Rru_A2198 0.85 +0.0
2,552,820 - -2.5
2,552,906 - +0.0
2,553,373 + Rru_A2199 0.29 +0.0
2,553,373 + Rru_A2199 0.29 +0.0
2,553,374 - Rru_A2199 0.29 -2.3
2,554,090 + Rru_A2199 0.71 -3.3
2,554,090 + Rru_A2199 0.71 +0.0
2,554,090 + Rru_A2199 0.71 +0.0
2,554,090 + Rru_A2199 0.71 -3.8
2,554,091 - Rru_A2199 0.71 +0.0
2,554,091 - Rru_A2199 0.71 -5.7
2,554,091 - Rru_A2199 0.71 +0.0
2,554,091 - Rru_A2199 0.71 +0.0
2,554,091 - Rru_A2199 0.71 +0.0
2,554,261 + Rru_A2199 0.81 +0.0
2,554,262 - Rru_A2199 0.81 +0.0
2,554,262 - Rru_A2199 0.81 +0.0
2,554,306 + Rru_A2199 0.84 +0.0
2,554,307 - Rru_A2199 0.84 +0.0
2,554,307 - Rru_A2199 0.84 +0.0
2,554,307 - Rru_A2199 0.84 +0.0
2,554,307 - Rru_A2199 0.84 +0.0
2,554,307 - Rru_A2199 0.84 +0.0
2,554,307 - Rru_A2199 0.84 -3.5
2,554,307 - Rru_A2199 0.84 -3.4
2,554,477 + +0.0
2,554,478 - -2.5
2,554,478 - +0.0
2,554,478 - +0.0
2,554,478 - -2.5
2,554,478 - +0.0
2,554,478 - -2.6
2,554,478 - +0.0
2,554,478 - +0.0
2,554,478 - +0.0
2,554,478 - -2.3
2,554,519 + +0.0
2,554,568 - +0.0
2,554,568 - +0.0
2,554,584 - +0.0
2,554,615 + +0.0
2,554,616 - -1.8
2,554,629 + +0.0
2,554,630 - +0.0
2,554,665 - +0.0
2,554,666 + -2.3
2,554,666 + +0.0
2,554,667 - +0.0
2,554,667 - -1.0
2,554,685 + +0.0
2,554,685 + -2.7
2,554,685 + +0.0
2,554,710 + +0.0
2,554,717 + +0.0
2,554,718 - +0.0
2,554,718 - +0.0
2,554,785 + Rru_A2200 0.16 +0.0
2,554,785 + Rru_A2200 0.16 +0.0
2,554,785 + Rru_A2200 0.16 +0.0
2,554,786 - Rru_A2200 0.16 +0.0
2,555,165 + +0.0
2,555,165 + +0.0
2,555,172 + +0.0
2,555,173 - -3.4
2,555,202 + +0.0
2,555,202 + +0.0
2,555,295 - -3.6

Or see this region's nucleotide sequence