Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2190

Experiment: L-Malic Acid (C) with ammonium chloride; no light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2187 and Rru_A2188 are separated by 316 nucleotidesRru_A2188 and Rru_A2189 are separated by 185 nucleotidesRru_A2189 and Rru_A2190 are separated by 151 nucleotidesRru_A2190 and Rru_A2191 are separated by 151 nucleotides Rru_A2187: Rru_A2187 - Serine/Threonine protein kinase (NCBI), at 2,541,462 to 2,542,799 _A2187 Rru_A2188: Rru_A2188 - hypothetical protein (NCBI), at 2,543,116 to 2,543,178 _A2188 Rru_A2189: Rru_A2189 - TRm3 transposase (NCBI), at 2,543,364 to 2,543,534 _A2189 Rru_A2190: Rru_A2190 - TRm3 transposase (NCBI), at 2,543,686 to 2,543,964 _A2190 Rru_A2191: Rru_A2191 - AMP-dependent synthetase and ligase (NCBI), at 2,544,116 to 2,545,933 _A2191 Position (kb) 2543 2544Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2542.756 kb on + strandat 2542.758 kb on + strandat 2542.841 kb on + strandat 2542.841 kb on + strandat 2542.841 kb on + strandat 2542.853 kb on - strandat 2542.943 kb on + strandat 2542.990 kb on + strandat 2542.991 kb on - strandat 2543.117 kb on + strandat 2543.118 kb on - strandat 2543.118 kb on - strandat 2543.244 kb on + strandat 2543.365 kb on + strandat 2543.366 kb on - strandat 2543.366 kb on - strandat 2543.367 kb on + strandat 2543.577 kb on - strandat 2543.591 kb on + strandat 2543.628 kb on - strandat 2543.683 kb on + strandat 2543.683 kb on + strandat 2543.687 kb on + strandat 2543.835 kb on + strand, within Rru_A2190at 2543.835 kb on + strand, within Rru_A2190at 2543.835 kb on + strand, within Rru_A2190at 2543.836 kb on - strand, within Rru_A2190at 2543.965 kb on - strandat 2543.965 kb on - strandat 2543.965 kb on - strandat 2543.965 kb on - strandat 2543.987 kb on + strandat 2543.987 kb on + strandat 2543.987 kb on + strandat 2544.028 kb on + strandat 2544.028 kb on + strandat 2544.036 kb on - strandat 2544.129 kb on + strandat 2544.130 kb on - strandat 2544.327 kb on + strand, within Rru_A2191at 2544.327 kb on + strand, within Rru_A2191at 2544.496 kb on + strand, within Rru_A2191at 2544.496 kb on + strand, within Rru_A2191at 2544.497 kb on - strand, within Rru_A2191at 2544.497 kb on - strand, within Rru_A2191at 2544.497 kb on - strand, within Rru_A2191at 2544.643 kb on - strand, within Rru_A2191at 2544.711 kb on + strand, within Rru_A2191at 2544.712 kb on - strand, within Rru_A2191at 2544.712 kb on - strand, within Rru_A2191at 2544.712 kb on - strand, within Rru_A2191at 2544.922 kb on + strand, within Rru_A2191at 2544.923 kb on - strand, within Rru_A2191at 2544.923 kb on - strand, within Rru_A2191at 2544.923 kb on - strand, within Rru_A2191at 2544.923 kb on - strand, within Rru_A2191at 2544.923 kb on - strand, within Rru_A2191at 2544.923 kb on - strand, within Rru_A2191

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
remove
2,542,756 + +0.0
2,542,758 + -1.9
2,542,841 + +0.0
2,542,841 + +0.0
2,542,841 + +0.0
2,542,853 - +0.0
2,542,943 + +0.0
2,542,990 + +0.0
2,542,991 - -1.5
2,543,117 + -5.0
2,543,118 - +0.0
2,543,118 - +0.0
2,543,244 + +0.0
2,543,365 + +0.0
2,543,366 - -1.6
2,543,366 - +0.0
2,543,367 + +0.0
2,543,577 - -1.8
2,543,591 + +0.0
2,543,628 - +0.0
2,543,683 + -2.1
2,543,683 + +0.0
2,543,687 + +0.0
2,543,835 + Rru_A2190 0.53 +0.0
2,543,835 + Rru_A2190 0.53 +0.0
2,543,835 + Rru_A2190 0.53 -3.0
2,543,836 - Rru_A2190 0.54 -1.0
2,543,965 - +0.0
2,543,965 - -2.1
2,543,965 - -1.0
2,543,965 - +0.0
2,543,987 + +0.0
2,543,987 + +0.0
2,543,987 + +0.0
2,544,028 + +0.0
2,544,028 + +0.0
2,544,036 - +0.0
2,544,129 + -1.7
2,544,130 - +0.0
2,544,327 + Rru_A2191 0.12 -2.0
2,544,327 + Rru_A2191 0.12 +0.0
2,544,496 + Rru_A2191 0.21 -2.0
2,544,496 + Rru_A2191 0.21 +0.0
2,544,497 - Rru_A2191 0.21 +0.0
2,544,497 - Rru_A2191 0.21 +0.0
2,544,497 - Rru_A2191 0.21 +0.0
2,544,643 - Rru_A2191 0.29 +0.0
2,544,711 + Rru_A2191 0.33 -1.5
2,544,712 - Rru_A2191 0.33 -1.9
2,544,712 - Rru_A2191 0.33 +0.0
2,544,712 - Rru_A2191 0.33 +0.0
2,544,922 + Rru_A2191 0.44 +0.0
2,544,923 - Rru_A2191 0.44 +0.0
2,544,923 - Rru_A2191 0.44 -2.2
2,544,923 - Rru_A2191 0.44 -1.0
2,544,923 - Rru_A2191 0.44 -2.5
2,544,923 - Rru_A2191 0.44 +0.0
2,544,923 - Rru_A2191 0.44 +0.0

Or see this region's nucleotide sequence