Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2137

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2135 and Rru_A2136 are separated by 421 nucleotidesRru_A2136 and Rru_A2137 are separated by 0 nucleotidesRru_A2137 and Rru_A2138 overlap by 4 nucleotidesRru_A2138 and Rru_A2139 overlap by 4 nucleotidesRru_A2139 and Rru_A2140 are separated by 211 nucleotides Rru_A2135: Rru_A2135 - Twin-arginine translocation pathway signal (NCBI), at 2,480,331 to 2,481,917 _A2135 Rru_A2136: Rru_A2136 - hypothetical protein (NCBI), at 2,482,339 to 2,482,911 _A2136 Rru_A2137: Rru_A2137 - Protein of unknown function DUF847 (NCBI), at 2,482,912 to 2,483,514 _A2137 Rru_A2138: Rru_A2138 - hypothetical protein (NCBI), at 2,483,511 to 2,483,726 _A2138 Rru_A2139: Rru_A2139 - hypothetical protein (NCBI), at 2,483,723 to 2,483,974 _A2139 Rru_A2140: Rru_A2140 - Transcriptional Regulator, XRE family (NCBI), at 2,484,186 to 2,484,776 _A2140 Position (kb) 2482 2483 2484Strain fitness (log2 ratio) -3 -2 -1 0 1at 2481.983 kb on - strandat 2482.154 kb on - strandat 2482.200 kb on - strandat 2482.200 kb on - strandat 2482.206 kb on - strandat 2482.206 kb on - strandat 2482.206 kb on - strandat 2482.211 kb on - strandat 2482.211 kb on - strandat 2482.211 kb on - strandat 2482.347 kb on + strandat 2482.562 kb on + strand, within Rru_A2136at 2482.562 kb on + strand, within Rru_A2136at 2482.563 kb on - strand, within Rru_A2136at 2482.616 kb on + strand, within Rru_A2136at 2482.616 kb on + strand, within Rru_A2136at 2482.617 kb on - strand, within Rru_A2136at 2482.617 kb on - strand, within Rru_A2136at 2482.731 kb on + strand, within Rru_A2136at 2482.732 kb on - strand, within Rru_A2136at 2482.776 kb on - strand, within Rru_A2136at 2483.194 kb on - strand, within Rru_A2137at 2483.276 kb on + strand, within Rru_A2137at 2483.277 kb on - strand, within Rru_A2137at 2483.314 kb on - strand, within Rru_A2137at 2483.322 kb on + strand, within Rru_A2137at 2483.427 kb on - strand, within Rru_A2137at 2483.880 kb on + strand, within Rru_A2139at 2483.881 kb on - strand, within Rru_A2139at 2483.881 kb on - strand, within Rru_A2139at 2483.943 kb on + strand, within Rru_A2139at 2483.943 kb on + strand, within Rru_A2139at 2483.944 kb on - strand, within Rru_A2139at 2484.006 kb on - strandat 2484.014 kb on + strandat 2484.174 kb on + strandat 2484.177 kb on - strandat 2484.177 kb on - strandat 2484.243 kb on + strandat 2484.243 kb on + strandat 2484.244 kb on - strandat 2484.288 kb on + strand, within Rru_A2140at 2484.289 kb on - strand, within Rru_A2140at 2484.291 kb on + strand, within Rru_A2140at 2484.291 kb on + strand, within Rru_A2140at 2484.291 kb on + strand, within Rru_A2140at 2484.292 kb on - strand, within Rru_A2140at 2484.375 kb on + strand, within Rru_A2140at 2484.375 kb on + strand, within Rru_A2140at 2484.376 kb on - strand, within Rru_A2140

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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2,481,983 - -2.9
2,482,154 - -0.0
2,482,200 - -0.0
2,482,200 - -0.0
2,482,206 - -1.8
2,482,206 - -0.0
2,482,206 - -1.6
2,482,211 - -0.0
2,482,211 - -2.4
2,482,211 - -1.0
2,482,347 + -0.0
2,482,562 + Rru_A2136 0.39 -2.2
2,482,562 + Rru_A2136 0.39 -0.0
2,482,563 - Rru_A2136 0.39 -1.6
2,482,616 + Rru_A2136 0.48 -0.0
2,482,616 + Rru_A2136 0.48 -0.0
2,482,617 - Rru_A2136 0.49 -0.0
2,482,617 - Rru_A2136 0.49 -0.0
2,482,731 + Rru_A2136 0.68 -0.0
2,482,732 - Rru_A2136 0.69 -0.0
2,482,776 - Rru_A2136 0.76 -1.7
2,483,194 - Rru_A2137 0.47 -0.0
2,483,276 + Rru_A2137 0.60 -2.2
2,483,277 - Rru_A2137 0.61 -0.0
2,483,314 - Rru_A2137 0.67 -0.0
2,483,322 + Rru_A2137 0.68 -0.0
2,483,427 - Rru_A2137 0.85 -3.5
2,483,880 + Rru_A2139 0.62 -0.0
2,483,881 - Rru_A2139 0.63 -1.0
2,483,881 - Rru_A2139 0.63 -2.3
2,483,943 + Rru_A2139 0.87 -0.0
2,483,943 + Rru_A2139 0.87 -0.0
2,483,944 - Rru_A2139 0.88 -0.0
2,484,006 - -3.1
2,484,014 + -2.3
2,484,174 + +0.0
2,484,177 - +0.0
2,484,177 - +0.0
2,484,243 + +0.0
2,484,243 + -2.5
2,484,244 - +0.0
2,484,288 + Rru_A2140 0.17 +0.0
2,484,289 - Rru_A2140 0.17 -3.0
2,484,291 + Rru_A2140 0.18 -3.0
2,484,291 + Rru_A2140 0.18 +0.0
2,484,291 + Rru_A2140 0.18 +0.0
2,484,292 - Rru_A2140 0.18 +0.0
2,484,375 + Rru_A2140 0.32 +0.0
2,484,375 + Rru_A2140 0.32 -2.9
2,484,376 - Rru_A2140 0.32 -2.9

Or see this region's nucleotide sequence