Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1959

Experiment: L-Malic Acid (C) with ammonium chloride; no light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1958 and Rru_A1959 are separated by 2 nucleotidesRru_A1959 and Rru_A1960 are separated by 71 nucleotidesRru_A1960 and Rru_A1961 are separated by 91 nucleotides Rru_A1958: Rru_A1958 - GMP reductase (NCBI), at 2,266,376 to 2,267,533 _A1958 Rru_A1959: Rru_A1959 - Radical SAM (NCBI), at 2,267,536 to 2,268,243 _A1959 Rru_A1960: Rru_A1960 - O-methyltransferase, family 3 (NCBI), at 2,268,315 to 2,268,983 _A1960 Rru_A1961: Rru_A1961 - Transcriptional Regulator, TetR family (NCBI), at 2,269,075 to 2,269,716 _A1961 Position (kb) 2267 2268 2269Strain fitness (log2 ratio) -3 -2 -1 0 1at 2266.812 kb on - strand, within Rru_A1958at 2266.812 kb on - strand, within Rru_A1958at 2267.282 kb on + strand, within Rru_A1958at 2267.282 kb on + strand, within Rru_A1958at 2267.283 kb on - strand, within Rru_A1958at 2267.283 kb on - strand, within Rru_A1958at 2267.362 kb on - strand, within Rru_A1958at 2267.378 kb on + strand, within Rru_A1958at 2267.378 kb on + strand, within Rru_A1958at 2267.379 kb on - strand, within Rru_A1958at 2267.379 kb on - strand, within Rru_A1958at 2267.379 kb on - strand, within Rru_A1958at 2267.609 kb on - strand, within Rru_A1959at 2267.888 kb on + strand, within Rru_A1959at 2267.989 kb on + strand, within Rru_A1959at 2267.989 kb on + strand, within Rru_A1959at 2267.989 kb on + strand, within Rru_A1959at 2267.989 kb on + strand, within Rru_A1959at 2267.989 kb on + strand, within Rru_A1959at 2267.989 kb on + strand, within Rru_A1959at 2267.990 kb on - strand, within Rru_A1959at 2267.990 kb on - strand, within Rru_A1959at 2268.206 kb on + strandat 2268.206 kb on + strandat 2268.207 kb on - strandat 2268.241 kb on + strandat 2268.241 kb on + strandat 2268.242 kb on - strandat 2268.242 kb on - strandat 2268.306 kb on + strandat 2268.307 kb on - strandat 2268.367 kb on + strandat 2268.367 kb on + strandat 2268.367 kb on + strandat 2268.368 kb on - strandat 2268.368 kb on - strandat 2268.368 kb on - strandat 2268.368 kb on - strandat 2268.368 kb on - strandat 2268.368 kb on - strandat 2268.400 kb on + strand, within Rru_A1960at 2268.400 kb on + strand, within Rru_A1960at 2268.400 kb on + strand, within Rru_A1960at 2268.400 kb on + strand, within Rru_A1960at 2268.400 kb on + strand, within Rru_A1960at 2268.401 kb on - strand, within Rru_A1960at 2268.401 kb on - strand, within Rru_A1960at 2268.401 kb on - strand, within Rru_A1960at 2268.401 kb on - strand, within Rru_A1960at 2268.484 kb on + strand, within Rru_A1960at 2268.608 kb on + strand, within Rru_A1960at 2268.609 kb on - strand, within Rru_A1960at 2268.766 kb on + strand, within Rru_A1960at 2268.766 kb on + strand, within Rru_A1960at 2268.766 kb on + strand, within Rru_A1960at 2268.766 kb on + strand, within Rru_A1960at 2268.766 kb on + strand, within Rru_A1960at 2268.766 kb on + strand, within Rru_A1960at 2268.767 kb on - strand, within Rru_A1960at 2268.767 kb on - strand, within Rru_A1960at 2268.767 kb on - strand, within Rru_A1960at 2268.767 kb on - strand, within Rru_A1960at 2268.767 kb on - strand, within Rru_A1960at 2268.767 kb on - strand, within Rru_A1960at 2268.824 kb on - strand, within Rru_A1960at 2268.824 kb on - strand, within Rru_A1960at 2268.835 kb on + strand, within Rru_A1960at 2268.836 kb on - strand, within Rru_A1960at 2268.974 kb on + strandat 2268.975 kb on - strandat 2269.101 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
remove
2,266,812 - Rru_A1958 0.38 +0.0
2,266,812 - Rru_A1958 0.38 -2.2
2,267,282 + Rru_A1958 0.78 +0.0
2,267,282 + Rru_A1958 0.78 +0.0
2,267,283 - Rru_A1958 0.78 +0.0
2,267,283 - Rru_A1958 0.78 -2.4
2,267,362 - Rru_A1958 0.85 +0.0
2,267,378 + Rru_A1958 0.87 +0.0
2,267,378 + Rru_A1958 0.87 -1.9
2,267,379 - Rru_A1958 0.87 -1.3
2,267,379 - Rru_A1958 0.87 +0.0
2,267,379 - Rru_A1958 0.87 -2.7
2,267,609 - Rru_A1959 0.10 -2.4
2,267,888 + Rru_A1959 0.50 -2.0
2,267,989 + Rru_A1959 0.64 +0.0
2,267,989 + Rru_A1959 0.64 +0.0
2,267,989 + Rru_A1959 0.64 -3.7
2,267,989 + Rru_A1959 0.64 -2.5
2,267,989 + Rru_A1959 0.64 +0.0
2,267,989 + Rru_A1959 0.64 +0.0
2,267,990 - Rru_A1959 0.64 +0.0
2,267,990 - Rru_A1959 0.64 +0.0
2,268,206 + -2.2
2,268,206 + -1.0
2,268,207 - -2.0
2,268,241 + +0.0
2,268,241 + +0.0
2,268,242 - +0.0
2,268,242 - +0.0
2,268,306 + -2.2
2,268,307 - -2.8
2,268,367 + +0.0
2,268,367 + +0.0
2,268,367 + -1.9
2,268,368 - -1.0
2,268,368 - +0.0
2,268,368 - +0.0
2,268,368 - +0.0
2,268,368 - -1.5
2,268,368 - +0.0
2,268,400 + Rru_A1960 0.13 -2.4
2,268,400 + Rru_A1960 0.13 -2.3
2,268,400 + Rru_A1960 0.13 +0.0
2,268,400 + Rru_A1960 0.13 -1.6
2,268,400 + Rru_A1960 0.13 -2.5
2,268,401 - Rru_A1960 0.13 -2.1
2,268,401 - Rru_A1960 0.13 +0.0
2,268,401 - Rru_A1960 0.13 +0.0
2,268,401 - Rru_A1960 0.13 +0.0
2,268,484 + Rru_A1960 0.25 +0.0
2,268,608 + Rru_A1960 0.44 +0.0
2,268,609 - Rru_A1960 0.44 +0.0
2,268,766 + Rru_A1960 0.67 +0.0
2,268,766 + Rru_A1960 0.67 +0.0
2,268,766 + Rru_A1960 0.67 +0.0
2,268,766 + Rru_A1960 0.67 +0.0
2,268,766 + Rru_A1960 0.67 +0.0
2,268,766 + Rru_A1960 0.67 +0.0
2,268,767 - Rru_A1960 0.68 -2.5
2,268,767 - Rru_A1960 0.68 +0.0
2,268,767 - Rru_A1960 0.68 -2.9
2,268,767 - Rru_A1960 0.68 -1.6
2,268,767 - Rru_A1960 0.68 +0.0
2,268,767 - Rru_A1960 0.68 +0.0
2,268,824 - Rru_A1960 0.76 +0.0
2,268,824 - Rru_A1960 0.76 -2.1
2,268,835 + Rru_A1960 0.78 +0.0
2,268,836 - Rru_A1960 0.78 -2.5
2,268,974 + +0.0
2,268,975 - +0.0
2,269,101 + -2.7

Or see this region's nucleotide sequence