Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1958 and Rru_A1959 are separated by 2 nucleotides Rru_A1959 and Rru_A1960 are separated by 71 nucleotides Rru_A1960 and Rru_A1961 are separated by 91 nucleotides
Rru_A1958: Rru_A1958 - GMP reductase (NCBI), at 2,266,376 to 2,267,533
_A1958
Rru_A1959: Rru_A1959 - Radical SAM (NCBI), at 2,267,536 to 2,268,243
_A1959
Rru_A1960: Rru_A1960 - O-methyltransferase, family 3 (NCBI), at 2,268,315 to 2,268,983
_A1960
Rru_A1961: Rru_A1961 - Transcriptional Regulator, TetR family (NCBI), at 2,269,075 to 2,269,716
_A1961
Position (kb)
2267
2268
2269 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2266.812 kb on - strand, within Rru_A1958 at 2266.812 kb on - strand, within Rru_A1958 at 2267.282 kb on + strand, within Rru_A1958 at 2267.282 kb on + strand, within Rru_A1958 at 2267.283 kb on - strand, within Rru_A1958 at 2267.283 kb on - strand, within Rru_A1958 at 2267.362 kb on - strand, within Rru_A1958 at 2267.378 kb on + strand, within Rru_A1958 at 2267.378 kb on + strand, within Rru_A1958 at 2267.379 kb on - strand, within Rru_A1958 at 2267.379 kb on - strand, within Rru_A1958 at 2267.379 kb on - strand, within Rru_A1958 at 2267.609 kb on - strand, within Rru_A1959 at 2267.888 kb on + strand, within Rru_A1959 at 2267.989 kb on + strand, within Rru_A1959 at 2267.989 kb on + strand, within Rru_A1959 at 2267.989 kb on + strand, within Rru_A1959 at 2267.989 kb on + strand, within Rru_A1959 at 2267.989 kb on + strand, within Rru_A1959 at 2267.989 kb on + strand, within Rru_A1959 at 2267.990 kb on - strand, within Rru_A1959 at 2267.990 kb on - strand, within Rru_A1959 at 2268.206 kb on + strand at 2268.206 kb on + strand at 2268.207 kb on - strand at 2268.241 kb on + strand at 2268.241 kb on + strand at 2268.242 kb on - strand at 2268.242 kb on - strand at 2268.306 kb on + strand at 2268.307 kb on - strand at 2268.367 kb on + strand at 2268.367 kb on + strand at 2268.367 kb on + strand at 2268.368 kb on - strand at 2268.368 kb on - strand at 2268.368 kb on - strand at 2268.368 kb on - strand at 2268.368 kb on - strand at 2268.368 kb on - strand at 2268.400 kb on + strand, within Rru_A1960 at 2268.400 kb on + strand, within Rru_A1960 at 2268.400 kb on + strand, within Rru_A1960 at 2268.400 kb on + strand, within Rru_A1960 at 2268.400 kb on + strand, within Rru_A1960 at 2268.401 kb on - strand, within Rru_A1960 at 2268.401 kb on - strand, within Rru_A1960 at 2268.401 kb on - strand, within Rru_A1960 at 2268.401 kb on - strand, within Rru_A1960 at 2268.484 kb on + strand, within Rru_A1960 at 2268.608 kb on + strand, within Rru_A1960 at 2268.609 kb on - strand, within Rru_A1960 at 2268.766 kb on + strand, within Rru_A1960 at 2268.766 kb on + strand, within Rru_A1960 at 2268.766 kb on + strand, within Rru_A1960 at 2268.766 kb on + strand, within Rru_A1960 at 2268.766 kb on + strand, within Rru_A1960 at 2268.766 kb on + strand, within Rru_A1960 at 2268.767 kb on - strand, within Rru_A1960 at 2268.767 kb on - strand, within Rru_A1960 at 2268.767 kb on - strand, within Rru_A1960 at 2268.767 kb on - strand, within Rru_A1960 at 2268.767 kb on - strand, within Rru_A1960 at 2268.767 kb on - strand, within Rru_A1960 at 2268.824 kb on - strand, within Rru_A1960 at 2268.824 kb on - strand, within Rru_A1960 at 2268.835 kb on + strand, within Rru_A1960 at 2268.836 kb on - strand, within Rru_A1960 at 2268.974 kb on + strand at 2268.975 kb on - strand at 2269.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 2,266,812 - Rru_A1958 0.38 +0.0 2,266,812 - Rru_A1958 0.38 -2.2 2,267,282 + Rru_A1958 0.78 +0.0 2,267,282 + Rru_A1958 0.78 +0.0 2,267,283 - Rru_A1958 0.78 +0.0 2,267,283 - Rru_A1958 0.78 -2.4 2,267,362 - Rru_A1958 0.85 +0.0 2,267,378 + Rru_A1958 0.87 +0.0 2,267,378 + Rru_A1958 0.87 -1.9 2,267,379 - Rru_A1958 0.87 -1.3 2,267,379 - Rru_A1958 0.87 +0.0 2,267,379 - Rru_A1958 0.87 -2.7 2,267,609 - Rru_A1959 0.10 -2.4 2,267,888 + Rru_A1959 0.50 -2.0 2,267,989 + Rru_A1959 0.64 +0.0 2,267,989 + Rru_A1959 0.64 +0.0 2,267,989 + Rru_A1959 0.64 -3.7 2,267,989 + Rru_A1959 0.64 -2.5 2,267,989 + Rru_A1959 0.64 +0.0 2,267,989 + Rru_A1959 0.64 +0.0 2,267,990 - Rru_A1959 0.64 +0.0 2,267,990 - Rru_A1959 0.64 +0.0 2,268,206 + -2.2 2,268,206 + -1.0 2,268,207 - -2.0 2,268,241 + +0.0 2,268,241 + +0.0 2,268,242 - +0.0 2,268,242 - +0.0 2,268,306 + -2.2 2,268,307 - -2.8 2,268,367 + +0.0 2,268,367 + +0.0 2,268,367 + -1.9 2,268,368 - -1.0 2,268,368 - +0.0 2,268,368 - +0.0 2,268,368 - +0.0 2,268,368 - -1.5 2,268,368 - +0.0 2,268,400 + Rru_A1960 0.13 -2.4 2,268,400 + Rru_A1960 0.13 -2.3 2,268,400 + Rru_A1960 0.13 +0.0 2,268,400 + Rru_A1960 0.13 -1.6 2,268,400 + Rru_A1960 0.13 -2.5 2,268,401 - Rru_A1960 0.13 -2.1 2,268,401 - Rru_A1960 0.13 +0.0 2,268,401 - Rru_A1960 0.13 +0.0 2,268,401 - Rru_A1960 0.13 +0.0 2,268,484 + Rru_A1960 0.25 +0.0 2,268,608 + Rru_A1960 0.44 +0.0 2,268,609 - Rru_A1960 0.44 +0.0 2,268,766 + Rru_A1960 0.67 +0.0 2,268,766 + Rru_A1960 0.67 +0.0 2,268,766 + Rru_A1960 0.67 +0.0 2,268,766 + Rru_A1960 0.67 +0.0 2,268,766 + Rru_A1960 0.67 +0.0 2,268,766 + Rru_A1960 0.67 +0.0 2,268,767 - Rru_A1960 0.68 -2.5 2,268,767 - Rru_A1960 0.68 +0.0 2,268,767 - Rru_A1960 0.68 -2.9 2,268,767 - Rru_A1960 0.68 -1.6 2,268,767 - Rru_A1960 0.68 +0.0 2,268,767 - Rru_A1960 0.68 +0.0 2,268,824 - Rru_A1960 0.76 +0.0 2,268,824 - Rru_A1960 0.76 -2.1 2,268,835 + Rru_A1960 0.78 +0.0 2,268,836 - Rru_A1960 0.78 -2.5 2,268,974 + +0.0 2,268,975 - +0.0 2,269,101 + -2.7
Or see this region's nucleotide sequence