Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1883

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1882 and Rru_A1883 are separated by 339 nucleotidesRru_A1883 and Rru_A1884 are separated by 144 nucleotides Rru_A1882: Rru_A1882 - Septum formation initiator (NCBI), at 2,180,697 to 2,181,020 _A1882 Rru_A1883: Rru_A1883 - Magnesium and cobalt transport protein CorA (NCBI), at 2,181,360 to 2,182,355 _A1883 Rru_A1884: Rru_A1884 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 2,182,500 to 2,183,540 _A1884 Position (kb) 2181 2182 2183Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2180.572 kb on - strandat 2181.098 kb on + strandat 2181.099 kb on - strandat 2181.278 kb on + strandat 2181.278 kb on + strandat 2181.278 kb on + strandat 2181.278 kb on + strandat 2181.278 kb on + strandat 2181.279 kb on - strandat 2181.279 kb on - strandat 2181.453 kb on - strandat 2181.460 kb on - strand, within Rru_A1883at 2181.996 kb on + strand, within Rru_A1883at 2181.997 kb on - strand, within Rru_A1883at 2181.997 kb on - strand, within Rru_A1883at 2181.997 kb on - strand, within Rru_A1883at 2182.230 kb on + strand, within Rru_A1883at 2182.230 kb on + strand, within Rru_A1883at 2182.230 kb on + strand, within Rru_A1883at 2182.249 kb on - strand, within Rru_A1883at 2182.250 kb on + strand, within Rru_A1883at 2182.250 kb on + strand, within Rru_A1883at 2182.417 kb on - strandat 2182.420 kb on - strandat 2182.565 kb on - strandat 2182.834 kb on + strand, within Rru_A1884at 2182.885 kb on - strand, within Rru_A1884at 2183.194 kb on - strand, within Rru_A1884at 2183.194 kb on - strand, within Rru_A1884

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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2,180,572 - +0.0
2,181,098 + -2.3
2,181,099 - +0.0
2,181,278 + -2.6
2,181,278 + +0.0
2,181,278 + +0.0
2,181,278 + -2.7
2,181,278 + -2.1
2,181,279 - +0.0
2,181,279 - +0.0
2,181,453 - +0.0
2,181,460 - Rru_A1883 0.10 +0.0
2,181,996 + Rru_A1883 0.64 +0.0
2,181,997 - Rru_A1883 0.64 +0.0
2,181,997 - Rru_A1883 0.64 +0.0
2,181,997 - Rru_A1883 0.64 +0.0
2,182,230 + Rru_A1883 0.87 +0.0
2,182,230 + Rru_A1883 0.87 +0.0
2,182,230 + Rru_A1883 0.87 +0.0
2,182,249 - Rru_A1883 0.89 +0.0
2,182,250 + Rru_A1883 0.89 +0.0
2,182,250 + Rru_A1883 0.89 -4.6
2,182,417 - -2.7
2,182,420 - -2.4
2,182,565 - +0.0
2,182,834 + Rru_A1884 0.32 +0.0
2,182,885 - Rru_A1884 0.37 +0.0
2,183,194 - Rru_A1884 0.67 +0.0
2,183,194 - Rru_A1884 0.67 +0.0

Or see this region's nucleotide sequence