Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1837 and Rru_A1838 are separated by 96 nucleotides Rru_A1838 and Rru_A1839 are separated by 11 nucleotides Rru_A1839 and Rru_A1840 are separated by 157 nucleotides
Rru_A1837: Rru_A1837 - Porphobilinogen synthase (NCBI), at 2,134,669 to 2,135,679
_A1837
Rru_A1838: Rru_A1838 - Alpha/beta hydrolase fold (NCBI), at 2,135,776 to 2,136,636
_A1838
Rru_A1839: Rru_A1839 - TRAP-type C4-dicarboxylate transport system periplasmic component-like (NCBI), at 2,136,648 to 2,137,709
_A1839
Rru_A1840: Rru_A1840 - Penicillin amidase (NCBI), at 2,137,867 to 2,140,332
_A1840
Position (kb)
2136
2137
2138 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2135.767 kb on + strand at 2135.768 kb on - strand at 2136.044 kb on + strand, within Rru_A1838 at 2136.045 kb on - strand, within Rru_A1838 at 2136.140 kb on + strand, within Rru_A1838 at 2136.141 kb on - strand, within Rru_A1838 at 2136.141 kb on - strand, within Rru_A1838 at 2136.180 kb on - strand, within Rru_A1838 at 2136.188 kb on + strand, within Rru_A1838 at 2136.188 kb on + strand, within Rru_A1838 at 2136.188 kb on + strand, within Rru_A1838 at 2136.188 kb on + strand, within Rru_A1838 at 2136.189 kb on - strand, within Rru_A1838 at 2136.189 kb on - strand, within Rru_A1838 at 2136.189 kb on - strand, within Rru_A1838 at 2136.189 kb on - strand, within Rru_A1838 at 2136.375 kb on - strand, within Rru_A1838 at 2136.563 kb on + strand at 2136.563 kb on + strand at 2136.563 kb on + strand at 2136.563 kb on + strand at 2136.563 kb on + strand at 2136.564 kb on - strand at 2136.564 kb on - strand at 2136.564 kb on - strand at 2136.564 kb on - strand at 2136.564 kb on - strand at 2136.564 kb on - strand at 2136.649 kb on + strand at 2136.650 kb on - strand at 2136.650 kb on - strand at 2136.650 kb on - strand at 2136.761 kb on + strand, within Rru_A1839 at 2136.761 kb on + strand, within Rru_A1839 at 2136.761 kb on + strand, within Rru_A1839 at 2136.762 kb on - strand, within Rru_A1839 at 2137.345 kb on + strand, within Rru_A1839 at 2137.345 kb on + strand, within Rru_A1839 at 2137.346 kb on - strand, within Rru_A1839 at 2137.346 kb on - strand, within Rru_A1839 at 2137.346 kb on - strand, within Rru_A1839 at 2137.505 kb on - strand, within Rru_A1839 at 2137.628 kb on - strand at 2137.767 kb on + strand at 2137.821 kb on + strand at 2137.821 kb on + strand at 2137.822 kb on - strand at 2137.822 kb on - strand at 2137.822 kb on - strand at 2137.904 kb on + strand at 2138.299 kb on + strand, within Rru_A1840 at 2138.300 kb on - strand, within Rru_A1840 at 2138.300 kb on - strand, within Rru_A1840 at 2138.341 kb on + strand, within Rru_A1840 at 2138.341 kb on + strand, within Rru_A1840 at 2138.342 kb on - strand, within Rru_A1840 at 2138.342 kb on - strand, within Rru_A1840 at 2138.342 kb on - strand, within Rru_A1840 at 2138.342 kb on - strand, within Rru_A1840
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 2,135,767 + +0.0 2,135,768 - -2.7 2,136,044 + Rru_A1838 0.31 -1.3 2,136,045 - Rru_A1838 0.31 +0.0 2,136,140 + Rru_A1838 0.42 +0.0 2,136,141 - Rru_A1838 0.42 +0.0 2,136,141 - Rru_A1838 0.42 +0.0 2,136,180 - Rru_A1838 0.47 -2.3 2,136,188 + Rru_A1838 0.48 +0.0 2,136,188 + Rru_A1838 0.48 +0.0 2,136,188 + Rru_A1838 0.48 +0.0 2,136,188 + Rru_A1838 0.48 +0.0 2,136,189 - Rru_A1838 0.48 +0.0 2,136,189 - Rru_A1838 0.48 +0.0 2,136,189 - Rru_A1838 0.48 +0.0 2,136,189 - Rru_A1838 0.48 +0.0 2,136,375 - Rru_A1838 0.70 +0.0 2,136,563 + +0.0 2,136,563 + -1.1 2,136,563 + -2.5 2,136,563 + -1.6 2,136,563 + -1.9 2,136,564 - +0.0 2,136,564 - +0.0 2,136,564 - +0.0 2,136,564 - +0.0 2,136,564 - +0.0 2,136,564 - +0.0 2,136,649 + +0.0 2,136,650 - +0.0 2,136,650 - +0.0 2,136,650 - +0.0 2,136,761 + Rru_A1839 0.11 +0.0 2,136,761 + Rru_A1839 0.11 +0.0 2,136,761 + Rru_A1839 0.11 +0.0 2,136,762 - Rru_A1839 0.11 +0.0 2,137,345 + Rru_A1839 0.66 +0.0 2,137,345 + Rru_A1839 0.66 +0.0 2,137,346 - Rru_A1839 0.66 +0.0 2,137,346 - Rru_A1839 0.66 +0.0 2,137,346 - Rru_A1839 0.66 +0.0 2,137,505 - Rru_A1839 0.81 -4.9 2,137,628 - +0.0 2,137,767 + +0.0 2,137,821 + -1.4 2,137,821 + -1.7 2,137,822 - -1.8 2,137,822 - +0.0 2,137,822 - +0.0 2,137,904 + -2.2 2,138,299 + Rru_A1840 0.18 +0.0 2,138,300 - Rru_A1840 0.18 +0.0 2,138,300 - Rru_A1840 0.18 -2.0 2,138,341 + Rru_A1840 0.19 +0.0 2,138,341 + Rru_A1840 0.19 +0.0 2,138,342 - Rru_A1840 0.19 +0.0 2,138,342 - Rru_A1840 0.19 -2.7 2,138,342 - Rru_A1840 0.19 +0.0 2,138,342 - Rru_A1840 0.19 -1.9
Or see this region's nucleotide sequence