Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1827

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1825 and Rru_A1826 are separated by 43 nucleotidesRru_A1826 and Rru_A1827 are separated by 43 nucleotidesRru_A1827 and Rru_A1828 are separated by 58 nucleotides Rru_A1825: Rru_A1825 - bifunctional deaminase-reductase (NCBI), at 2,123,561 to 2,124,664 _A1825 Rru_A1826: Rru_A1826 - Protein of unknown function DUF193 (NCBI), at 2,124,708 to 2,125,166 _A1826 Rru_A1827: Rru_A1827 - Glycine hydroxymethyltransferase (NCBI), at 2,125,210 to 2,126,502 _A1827 Rru_A1828: Rru_A1828 - Ribose 5-phosphate isomerase B (NCBI), at 2,126,561 to 2,127,049 _A1828 Position (kb) 2125 2126 2127Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2125.212 kb on - strandat 2125.212 kb on - strandat 2125.212 kb on - strandat 2125.214 kb on - strandat 2125.224 kb on - strandat 2125.224 kb on - strandat 2125.224 kb on - strandat 2125.224 kb on - strandat 2125.224 kb on - strandat 2125.226 kb on - strandat 2125.226 kb on - strandat 2125.461 kb on + strand, within Rru_A1827at 2125.461 kb on + strand, within Rru_A1827at 2125.462 kb on - strand, within Rru_A1827at 2125.462 kb on - strand, within Rru_A1827at 2125.462 kb on - strand, within Rru_A1827at 2125.491 kb on + strand, within Rru_A1827at 2125.492 kb on - strand, within Rru_A1827at 2125.492 kb on - strand, within Rru_A1827at 2125.625 kb on + strand, within Rru_A1827at 2125.625 kb on + strand, within Rru_A1827at 2125.625 kb on + strand, within Rru_A1827at 2125.625 kb on + strand, within Rru_A1827at 2125.626 kb on - strand, within Rru_A1827at 2125.626 kb on - strand, within Rru_A1827at 2125.626 kb on - strand, within Rru_A1827at 2125.626 kb on - strand, within Rru_A1827at 2125.626 kb on - strand, within Rru_A1827at 2125.683 kb on + strand, within Rru_A1827at 2125.683 kb on + strand, within Rru_A1827at 2125.683 kb on + strand, within Rru_A1827at 2125.683 kb on + strand, within Rru_A1827at 2125.683 kb on + strand, within Rru_A1827at 2125.683 kb on + strand, within Rru_A1827at 2125.683 kb on + strand, within Rru_A1827at 2125.683 kb on + strand, within Rru_A1827at 2125.684 kb on - strand, within Rru_A1827at 2125.684 kb on - strand, within Rru_A1827at 2125.684 kb on - strand, within Rru_A1827at 2125.795 kb on - strand, within Rru_A1827at 2125.795 kb on - strand, within Rru_A1827at 2125.795 kb on - strand, within Rru_A1827at 2125.795 kb on - strand, within Rru_A1827at 2125.824 kb on - strand, within Rru_A1827at 2126.213 kb on + strand, within Rru_A1827at 2126.213 kb on + strand, within Rru_A1827at 2126.213 kb on + strand, within Rru_A1827at 2126.213 kb on + strand, within Rru_A1827at 2126.213 kb on + strand, within Rru_A1827at 2126.213 kb on + strand, within Rru_A1827at 2126.213 kb on + strand, within Rru_A1827at 2126.213 kb on + strand, within Rru_A1827at 2126.214 kb on - strand, within Rru_A1827at 2126.214 kb on - strand, within Rru_A1827at 2126.214 kb on - strand, within Rru_A1827at 2126.214 kb on - strand, within Rru_A1827at 2126.214 kb on - strand, within Rru_A1827at 2126.214 kb on - strand, within Rru_A1827at 2126.214 kb on - strand, within Rru_A1827at 2126.288 kb on + strand, within Rru_A1827at 2126.289 kb on - strand, within Rru_A1827at 2126.319 kb on - strand, within Rru_A1827at 2126.319 kb on - strand, within Rru_A1827at 2126.322 kb on + strand, within Rru_A1827at 2126.322 kb on + strand, within Rru_A1827at 2126.322 kb on + strand, within Rru_A1827at 2126.323 kb on - strand, within Rru_A1827at 2126.323 kb on - strand, within Rru_A1827at 2126.492 kb on + strandat 2126.492 kb on + strandat 2127.138 kb on + strandat 2127.138 kb on + strandat 2127.139 kb on - strandat 2127.215 kb on - strandat 2127.400 kb on + strandat 2127.492 kb on + strandat 2127.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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2,125,212 - -2.5
2,125,212 - +0.0
2,125,212 - -3.1
2,125,214 - -3.3
2,125,224 - -2.7
2,125,224 - -2.5
2,125,224 - +0.0
2,125,224 - +0.0
2,125,224 - +0.0
2,125,226 - -2.3
2,125,226 - +0.0
2,125,461 + Rru_A1827 0.19 +0.0
2,125,461 + Rru_A1827 0.19 -4.5
2,125,462 - Rru_A1827 0.19 +0.0
2,125,462 - Rru_A1827 0.19 -5.5
2,125,462 - Rru_A1827 0.19 +0.0
2,125,491 + Rru_A1827 0.22 +0.0
2,125,492 - Rru_A1827 0.22 +0.0
2,125,492 - Rru_A1827 0.22 -5.0
2,125,625 + Rru_A1827 0.32 -4.8
2,125,625 + Rru_A1827 0.32 -5.7
2,125,625 + Rru_A1827 0.32 +0.0
2,125,625 + Rru_A1827 0.32 -6.1
2,125,626 - Rru_A1827 0.32 +0.0
2,125,626 - Rru_A1827 0.32 +0.0
2,125,626 - Rru_A1827 0.32 +0.0
2,125,626 - Rru_A1827 0.32 +0.0
2,125,626 - Rru_A1827 0.32 +0.0
2,125,683 + Rru_A1827 0.37 +0.0
2,125,683 + Rru_A1827 0.37 +0.0
2,125,683 + Rru_A1827 0.37 +0.0
2,125,683 + Rru_A1827 0.37 -1.0
2,125,683 + Rru_A1827 0.37 +0.0
2,125,683 + Rru_A1827 0.37 +0.0
2,125,683 + Rru_A1827 0.37 +0.0
2,125,683 + Rru_A1827 0.37 +0.0
2,125,684 - Rru_A1827 0.37 +0.0
2,125,684 - Rru_A1827 0.37 -5.1
2,125,684 - Rru_A1827 0.37 +0.0
2,125,795 - Rru_A1827 0.45 +0.0
2,125,795 - Rru_A1827 0.45 -4.1
2,125,795 - Rru_A1827 0.45 +0.0
2,125,795 - Rru_A1827 0.45 +0.0
2,125,824 - Rru_A1827 0.47 +0.0
2,126,213 + Rru_A1827 0.78 +0.0
2,126,213 + Rru_A1827 0.78 +0.0
2,126,213 + Rru_A1827 0.78 +0.0
2,126,213 + Rru_A1827 0.78 +0.0
2,126,213 + Rru_A1827 0.78 +0.0
2,126,213 + Rru_A1827 0.78 -4.7
2,126,213 + Rru_A1827 0.78 -2.0
2,126,213 + Rru_A1827 0.78 +0.0
2,126,214 - Rru_A1827 0.78 +0.0
2,126,214 - Rru_A1827 0.78 +0.0
2,126,214 - Rru_A1827 0.78 +0.0
2,126,214 - Rru_A1827 0.78 +0.0
2,126,214 - Rru_A1827 0.78 +0.0
2,126,214 - Rru_A1827 0.78 +0.0
2,126,214 - Rru_A1827 0.78 +0.0
2,126,288 + Rru_A1827 0.83 +0.0
2,126,289 - Rru_A1827 0.83 -5.3
2,126,319 - Rru_A1827 0.86 +0.0
2,126,319 - Rru_A1827 0.86 +0.0
2,126,322 + Rru_A1827 0.86 -1.6
2,126,322 + Rru_A1827 0.86 -5.6
2,126,322 + Rru_A1827 0.86 +0.0
2,126,323 - Rru_A1827 0.86 +0.0
2,126,323 - Rru_A1827 0.86 +0.0
2,126,492 + +0.0
2,126,492 + +0.0
2,127,138 + +0.0
2,127,138 + +0.0
2,127,139 - +0.0
2,127,215 - +0.0
2,127,400 + -3.1
2,127,492 + -2.5
2,127,493 - +0.0

Or see this region's nucleotide sequence