Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1718

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1716 and Rru_A1717 overlap by 4 nucleotidesRru_A1717 and Rru_A1718 are separated by 536 nucleotidesRru_A1718 and Rru_A1719 overlap by 4 nucleotides Rru_A1716: Rru_A1716 - YeeE/YedE (NCBI), at 2,008,140 to 2,008,547 _A1716 Rru_A1717: Rru_A1717 - Transcriptional Regulator, ArsR family (NCBI), at 2,008,544 to 2,008,912 _A1717 Rru_A1718: Rru_A1718 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase (NCBI), at 2,009,449 to 2,011,794 _A1718 Rru_A1719: Rru_A1719 - Thioesterase superfamily (NCBI), at 2,011,791 to 2,012,582 _A1719 Position (kb) 2009 2010 2011 2012Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2008.578 kb on + strandat 2008.578 kb on + strandat 2008.579 kb on - strandat 2008.743 kb on + strand, within Rru_A1717at 2008.743 kb on + strand, within Rru_A1717at 2008.744 kb on - strand, within Rru_A1717at 2008.744 kb on - strand, within Rru_A1717at 2008.744 kb on - strand, within Rru_A1717at 2008.801 kb on + strand, within Rru_A1717at 2008.802 kb on - strand, within Rru_A1717at 2008.802 kb on - strand, within Rru_A1717at 2008.802 kb on - strand, within Rru_A1717at 2008.802 kb on - strand, within Rru_A1717at 2009.073 kb on + strandat 2009.074 kb on - strandat 2009.074 kb on - strandat 2009.075 kb on + strandat 2009.075 kb on + strandat 2009.075 kb on + strandat 2009.075 kb on + strandat 2009.075 kb on + strandat 2009.076 kb on - strandat 2009.076 kb on - strandat 2009.076 kb on - strandat 2009.076 kb on - strandat 2009.076 kb on - strandat 2009.076 kb on - strandat 2009.076 kb on - strandat 2009.076 kb on - strandat 2009.076 kb on - strandat 2009.076 kb on - strandat 2009.081 kb on + strandat 2009.081 kb on + strandat 2009.081 kb on + strandat 2009.082 kb on - strandat 2009.082 kb on - strandat 2009.082 kb on - strandat 2009.089 kb on + strandat 2009.089 kb on + strandat 2009.089 kb on + strandat 2009.089 kb on + strandat 2009.090 kb on - strandat 2009.120 kb on + strandat 2009.171 kb on + strandat 2009.171 kb on + strandat 2009.171 kb on + strandat 2009.171 kb on + strandat 2009.227 kb on + strandat 2009.228 kb on - strandat 2009.306 kb on - strandat 2009.332 kb on + strandat 2009.332 kb on + strandat 2009.332 kb on + strandat 2009.333 kb on - strandat 2009.333 kb on - strandat 2009.470 kb on - strandat 2009.533 kb on + strandat 2009.533 kb on + strandat 2009.534 kb on - strandat 2009.534 kb on - strandat 2009.657 kb on - strandat 2009.673 kb on + strandat 2009.739 kb on + strand, within Rru_A1718at 2009.739 kb on + strand, within Rru_A1718at 2009.739 kb on + strand, within Rru_A1718at 2009.739 kb on + strand, within Rru_A1718at 2009.740 kb on - strand, within Rru_A1718at 2009.740 kb on - strand, within Rru_A1718at 2009.743 kb on + strand, within Rru_A1718at 2009.743 kb on + strand, within Rru_A1718at 2009.743 kb on + strand, within Rru_A1718at 2009.744 kb on - strand, within Rru_A1718at 2009.744 kb on - strand, within Rru_A1718at 2009.852 kb on - strand, within Rru_A1718at 2009.858 kb on - strand, within Rru_A1718at 2009.858 kb on - strand, within Rru_A1718at 2009.858 kb on - strand, within Rru_A1718at 2009.859 kb on + strand, within Rru_A1718at 2009.859 kb on + strand, within Rru_A1718at 2009.859 kb on + strand, within Rru_A1718at 2009.860 kb on - strand, within Rru_A1718at 2009.860 kb on - strand, within Rru_A1718at 2009.950 kb on - strand, within Rru_A1718at 2009.950 kb on - strand, within Rru_A1718at 2009.987 kb on + strand, within Rru_A1718at 2009.987 kb on + strand, within Rru_A1718at 2009.988 kb on - strand, within Rru_A1718at 2010.053 kb on + strand, within Rru_A1718at 2010.053 kb on + strand, within Rru_A1718at 2010.053 kb on + strand, within Rru_A1718at 2010.054 kb on - strand, within Rru_A1718at 2010.054 kb on - strand, within Rru_A1718at 2010.054 kb on - strand, within Rru_A1718at 2010.055 kb on + strand, within Rru_A1718at 2010.055 kb on + strand, within Rru_A1718at 2010.055 kb on + strand, within Rru_A1718at 2010.056 kb on - strand, within Rru_A1718at 2010.056 kb on - strand, within Rru_A1718at 2010.169 kb on + strand, within Rru_A1718at 2010.170 kb on - strand, within Rru_A1718at 2010.221 kb on - strand, within Rru_A1718at 2010.880 kb on + strand, within Rru_A1718at 2010.881 kb on - strand, within Rru_A1718at 2010.881 kb on - strand, within Rru_A1718at 2010.988 kb on + strand, within Rru_A1718at 2011.045 kb on + strand, within Rru_A1718at 2011.045 kb on + strand, within Rru_A1718at 2011.046 kb on - strand, within Rru_A1718at 2011.046 kb on - strand, within Rru_A1718at 2011.057 kb on + strand, within Rru_A1718at 2011.058 kb on - strand, within Rru_A1718at 2011.127 kb on - strand, within Rru_A1718at 2011.265 kb on + strand, within Rru_A1718at 2011.266 kb on - strand, within Rru_A1718at 2011.266 kb on - strand, within Rru_A1718at 2011.360 kb on + strand, within Rru_A1718at 2011.361 kb on - strand, within Rru_A1718at 2011.361 kb on - strand, within Rru_A1718at 2011.361 kb on - strand, within Rru_A1718at 2011.434 kb on + strand, within Rru_A1718at 2011.434 kb on + strand, within Rru_A1718at 2011.434 kb on + strand, within Rru_A1718at 2011.434 kb on + strand, within Rru_A1718at 2011.434 kb on + strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.435 kb on - strand, within Rru_A1718at 2011.441 kb on + strand, within Rru_A1718at 2011.441 kb on + strand, within Rru_A1718at 2011.441 kb on + strand, within Rru_A1718at 2011.441 kb on + strand, within Rru_A1718at 2011.549 kb on + strand, within Rru_A1718at 2011.549 kb on + strand, within Rru_A1718at 2011.551 kb on + strand, within Rru_A1718at 2011.551 kb on + strand, within Rru_A1718at 2011.551 kb on + strand, within Rru_A1718at 2011.551 kb on + strand, within Rru_A1718at 2011.551 kb on + strand, within Rru_A1718at 2011.551 kb on + strand, within Rru_A1718at 2011.551 kb on + strand, within Rru_A1718at 2011.551 kb on + strand, within Rru_A1718at 2011.552 kb on - strand, within Rru_A1718at 2011.552 kb on - strand, within Rru_A1718at 2011.552 kb on - strand, within Rru_A1718at 2011.552 kb on - strand, within Rru_A1718at 2011.552 kb on - strand, within Rru_A1718at 2011.552 kb on - strand, within Rru_A1718at 2011.552 kb on - strand, within Rru_A1718at 2011.552 kb on - strand, within Rru_A1718at 2011.737 kb on + strandat 2011.737 kb on + strandat 2011.737 kb on + strandat 2011.738 kb on - strandat 2011.738 kb on - strandat 2011.901 kb on + strand, within Rru_A1719at 2011.901 kb on + strand, within Rru_A1719at 2012.274 kb on + strand, within Rru_A1719at 2012.275 kb on - strand, within Rru_A1719at 2012.606 kb on + strandat 2012.606 kb on + strandat 2012.648 kb on + strandat 2012.649 kb on - strandat 2012.649 kb on - strandat 2012.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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2,008,578 + -2.7
2,008,578 + -2.3
2,008,579 - +0.0
2,008,743 + Rru_A1717 0.54 +0.0
2,008,743 + Rru_A1717 0.54 -2.4
2,008,744 - Rru_A1717 0.54 +0.0
2,008,744 - Rru_A1717 0.54 +0.0
2,008,744 - Rru_A1717 0.54 +0.0
2,008,801 + Rru_A1717 0.70 +0.0
2,008,802 - Rru_A1717 0.70 +0.0
2,008,802 - Rru_A1717 0.70 +0.0
2,008,802 - Rru_A1717 0.70 +0.0
2,008,802 - Rru_A1717 0.70 -2.7
2,009,073 + +0.0
2,009,074 - +0.0
2,009,074 - +0.0
2,009,075 + +0.0
2,009,075 + -1.4
2,009,075 + -2.8
2,009,075 + -1.8
2,009,075 + +0.0
2,009,076 - +0.0
2,009,076 - +0.0
2,009,076 - +0.0
2,009,076 - +0.0
2,009,076 - +0.0
2,009,076 - -2.1
2,009,076 - +0.0
2,009,076 - -2.2
2,009,076 - +0.0
2,009,076 - +0.0
2,009,081 + +0.0
2,009,081 + +0.0
2,009,081 + +0.0
2,009,082 - +0.0
2,009,082 - +0.0
2,009,082 - +0.0
2,009,089 + -2.4
2,009,089 + +0.0
2,009,089 + +0.0
2,009,089 + -1.9
2,009,090 - +0.0
2,009,120 + +0.0
2,009,171 + +0.0
2,009,171 + +0.0
2,009,171 + +0.0
2,009,171 + +0.0
2,009,227 + -3.8
2,009,228 - -7.4
2,009,306 - -4.5
2,009,332 + -6.2
2,009,332 + +0.0
2,009,332 + +0.0
2,009,333 - +0.0
2,009,333 - +0.0
2,009,470 - -3.4
2,009,533 + -4.2
2,009,533 + +0.0
2,009,534 - +0.0
2,009,534 - -3.5
2,009,657 - +0.0
2,009,673 + -3.5
2,009,739 + Rru_A1718 0.12 +0.0
2,009,739 + Rru_A1718 0.12 +0.0
2,009,739 + Rru_A1718 0.12 +0.0
2,009,739 + Rru_A1718 0.12 +0.0
2,009,740 - Rru_A1718 0.12 +0.0
2,009,740 - Rru_A1718 0.12 +0.0
2,009,743 + Rru_A1718 0.13 +0.0
2,009,743 + Rru_A1718 0.13 -3.4
2,009,743 + Rru_A1718 0.13 -4.4
2,009,744 - Rru_A1718 0.13 +0.0
2,009,744 - Rru_A1718 0.13 +0.0
2,009,852 - Rru_A1718 0.17 +0.0
2,009,858 - Rru_A1718 0.17 +0.0
2,009,858 - Rru_A1718 0.17 -1.6
2,009,858 - Rru_A1718 0.17 +0.0
2,009,859 + Rru_A1718 0.17 +0.0
2,009,859 + Rru_A1718 0.17 -3.9
2,009,859 + Rru_A1718 0.17 +0.0
2,009,860 - Rru_A1718 0.18 +0.0
2,009,860 - Rru_A1718 0.18 +0.0
2,009,950 - Rru_A1718 0.21 -3.8
2,009,950 - Rru_A1718 0.21 +0.0
2,009,987 + Rru_A1718 0.23 -3.7
2,009,987 + Rru_A1718 0.23 -1.6
2,009,988 - Rru_A1718 0.23 +0.0
2,010,053 + Rru_A1718 0.26 +0.0
2,010,053 + Rru_A1718 0.26 -1.0
2,010,053 + Rru_A1718 0.26 +0.0
2,010,054 - Rru_A1718 0.26 +0.0
2,010,054 - Rru_A1718 0.26 +0.0
2,010,054 - Rru_A1718 0.26 -3.9
2,010,055 + Rru_A1718 0.26 +0.0
2,010,055 + Rru_A1718 0.26 +0.0
2,010,055 + Rru_A1718 0.26 +0.0
2,010,056 - Rru_A1718 0.26 +0.0
2,010,056 - Rru_A1718 0.26 -2.9
2,010,169 + Rru_A1718 0.31 -4.5
2,010,170 - Rru_A1718 0.31 +0.0
2,010,221 - Rru_A1718 0.33 -1.0
2,010,880 + Rru_A1718 0.61 +0.0
2,010,881 - Rru_A1718 0.61 -1.0
2,010,881 - Rru_A1718 0.61 +0.0
2,010,988 + Rru_A1718 0.66 -4.4
2,011,045 + Rru_A1718 0.68 +0.0
2,011,045 + Rru_A1718 0.68 +0.0
2,011,046 - Rru_A1718 0.68 +0.0
2,011,046 - Rru_A1718 0.68 +0.0
2,011,057 + Rru_A1718 0.69 +0.0
2,011,058 - Rru_A1718 0.69 +0.0
2,011,127 - Rru_A1718 0.72 +0.0
2,011,265 + Rru_A1718 0.77 +0.0
2,011,266 - Rru_A1718 0.77 +0.0
2,011,266 - Rru_A1718 0.77 +0.0
2,011,360 + Rru_A1718 0.81 +0.0
2,011,361 - Rru_A1718 0.82 -4.7
2,011,361 - Rru_A1718 0.82 -4.5
2,011,361 - Rru_A1718 0.82 -3.8
2,011,434 + Rru_A1718 0.85 +0.0
2,011,434 + Rru_A1718 0.85 -3.8
2,011,434 + Rru_A1718 0.85 +0.0
2,011,434 + Rru_A1718 0.85 +0.0
2,011,434 + Rru_A1718 0.85 +0.0
2,011,435 - Rru_A1718 0.85 +0.0
2,011,435 - Rru_A1718 0.85 +0.0
2,011,435 - Rru_A1718 0.85 -1.0
2,011,435 - Rru_A1718 0.85 +0.0
2,011,435 - Rru_A1718 0.85 -4.9
2,011,435 - Rru_A1718 0.85 +0.0
2,011,435 - Rru_A1718 0.85 +0.0
2,011,435 - Rru_A1718 0.85 -4.6
2,011,435 - Rru_A1718 0.85 -4.8
2,011,435 - Rru_A1718 0.85 +0.0
2,011,435 - Rru_A1718 0.85 -4.0
2,011,435 - Rru_A1718 0.85 -4.1
2,011,435 - Rru_A1718 0.85 +0.0
2,011,435 - Rru_A1718 0.85 +0.0
2,011,435 - Rru_A1718 0.85 -4.4
2,011,441 + Rru_A1718 0.85 +0.0
2,011,441 + Rru_A1718 0.85 +0.0
2,011,441 + Rru_A1718 0.85 -4.7
2,011,441 + Rru_A1718 0.85 -4.5
2,011,549 + Rru_A1718 0.90 +0.0
2,011,549 + Rru_A1718 0.90 +0.0
2,011,551 + Rru_A1718 0.90 +0.0
2,011,551 + Rru_A1718 0.90 -3.8
2,011,551 + Rru_A1718 0.90 +0.0
2,011,551 + Rru_A1718 0.90 +0.0
2,011,551 + Rru_A1718 0.90 +0.0
2,011,551 + Rru_A1718 0.90 +0.0
2,011,551 + Rru_A1718 0.90 +0.0
2,011,551 + Rru_A1718 0.90 +0.0
2,011,552 - Rru_A1718 0.90 +0.0
2,011,552 - Rru_A1718 0.90 +0.0
2,011,552 - Rru_A1718 0.90 +0.0
2,011,552 - Rru_A1718 0.90 -4.1
2,011,552 - Rru_A1718 0.90 +0.0
2,011,552 - Rru_A1718 0.90 +0.0
2,011,552 - Rru_A1718 0.90 +0.0
2,011,552 - Rru_A1718 0.90 +0.0
2,011,737 + -4.1
2,011,737 + -3.4
2,011,737 + -3.0
2,011,738 - -5.7
2,011,738 - +0.0
2,011,901 + Rru_A1719 0.14 +0.0
2,011,901 + Rru_A1719 0.14 +0.0
2,012,274 + Rru_A1719 0.61 -2.3
2,012,275 - Rru_A1719 0.61 +0.0
2,012,606 + +0.0
2,012,606 + +0.0
2,012,648 + +0.0
2,012,649 - +0.0
2,012,649 - +0.0
2,012,777 - +0.0

Or see this region's nucleotide sequence