Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1694 and Rru_A1695 are separated by 317 nucleotides Rru_A1695 and Rru_A1696 are separated by 19 nucleotides Rru_A1696 and Rru_A1697 are separated by 86 nucleotides
Rru_A1694: Rru_A1694 - hypothetical protein (NCBI), at 1,985,410 to 1,986,276
_A1694
Rru_A1695: Rru_A1695 - Protein of unknown function DUF411 (NCBI), at 1,986,594 to 1,987,034
_A1695
Rru_A1696: Rru_A1696 - permease (NCBI), at 1,987,054 to 1,987,596
_A1696
Rru_A1697: Rru_A1697 - hypothetical protein (NCBI), at 1,987,683 to 1,988,042
_A1697
Position (kb) 1986
1987
1988 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1985.976 kb on + strand, within Rru_A1694 at 1985.999 kb on + strand, within Rru_A1694 at 1985.999 kb on + strand, within Rru_A1694 at 1986.112 kb on - strand, within Rru_A1694 at 1986.120 kb on + strand, within Rru_A1694 at 1986.121 kb on - strand, within Rru_A1694 at 1986.299 kb on + strand at 1986.299 kb on + strand at 1986.340 kb on + strand at 1986.341 kb on - strand at 1986.475 kb on + strand at 1986.506 kb on - strand at 1986.515 kb on + strand at 1986.524 kb on - strand at 1986.596 kb on - strand at 1986.647 kb on + strand, within Rru_A1695 at 1986.647 kb on + strand, within Rru_A1695 at 1986.648 kb on - strand, within Rru_A1695 at 1986.708 kb on - strand, within Rru_A1695 at 1986.778 kb on + strand, within Rru_A1695 at 1986.778 kb on + strand, within Rru_A1695 at 1986.779 kb on - strand, within Rru_A1695 at 1986.779 kb on - strand, within Rru_A1695 at 1986.779 kb on - strand, within Rru_A1695 at 1986.798 kb on - strand, within Rru_A1695 at 1986.829 kb on - strand, within Rru_A1695 at 1986.849 kb on + strand, within Rru_A1695 at 1986.849 kb on + strand, within Rru_A1695 at 1986.849 kb on + strand, within Rru_A1695 at 1986.850 kb on - strand, within Rru_A1695 at 1986.850 kb on - strand, within Rru_A1695 at 1986.850 kb on - strand, within Rru_A1695 at 1986.850 kb on - strand, within Rru_A1695 at 1986.880 kb on + strand, within Rru_A1695 at 1987.055 kb on + strand at 1987.077 kb on + strand at 1987.077 kb on + strand at 1987.110 kb on + strand, within Rru_A1696 at 1987.110 kb on + strand, within Rru_A1696 at 1987.110 kb on + strand, within Rru_A1696 at 1987.110 kb on + strand, within Rru_A1696 at 1987.177 kb on - strand, within Rru_A1696 at 1987.307 kb on + strand, within Rru_A1696 at 1987.307 kb on + strand, within Rru_A1696 at 1987.307 kb on + strand, within Rru_A1696 at 1987.389 kb on - strand, within Rru_A1696 at 1987.389 kb on - strand, within Rru_A1696 at 1987.409 kb on + strand, within Rru_A1696 at 1987.475 kb on + strand, within Rru_A1696 at 1987.475 kb on + strand, within Rru_A1696 at 1987.580 kb on + strand at 1987.580 kb on + strand at 1987.580 kb on + strand at 1987.580 kb on + strand at 1987.581 kb on - strand at 1987.581 kb on - strand at 1987.581 kb on - strand at 1987.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 1,985,976 + Rru_A1694 0.65 -2.8 1,985,999 + Rru_A1694 0.68 +0.0 1,985,999 + Rru_A1694 0.68 +0.0 1,986,112 - Rru_A1694 0.81 +0.0 1,986,120 + Rru_A1694 0.82 -2.1 1,986,121 - Rru_A1694 0.82 -1.3 1,986,299 + +0.0 1,986,299 + +0.0 1,986,340 + +0.0 1,986,341 - +0.0 1,986,475 + -2.4 1,986,506 - -2.3 1,986,515 + -2.5 1,986,524 - +0.0 1,986,596 - +0.0 1,986,647 + Rru_A1695 0.12 +0.0 1,986,647 + Rru_A1695 0.12 +0.0 1,986,648 - Rru_A1695 0.12 +0.0 1,986,708 - Rru_A1695 0.26 +0.0 1,986,778 + Rru_A1695 0.42 +0.0 1,986,778 + Rru_A1695 0.42 +0.0 1,986,779 - Rru_A1695 0.42 -2.2 1,986,779 - Rru_A1695 0.42 +0.0 1,986,779 - Rru_A1695 0.42 -3.5 1,986,798 - Rru_A1695 0.46 +0.0 1,986,829 - Rru_A1695 0.53 +0.0 1,986,849 + Rru_A1695 0.58 -3.0 1,986,849 + Rru_A1695 0.58 +0.0 1,986,849 + Rru_A1695 0.58 +0.0 1,986,850 - Rru_A1695 0.58 -0.8 1,986,850 - Rru_A1695 0.58 -2.0 1,986,850 - Rru_A1695 0.58 -2.5 1,986,850 - Rru_A1695 0.58 +0.0 1,986,880 + Rru_A1695 0.65 -2.0 1,987,055 + -1.7 1,987,077 + -1.7 1,987,077 + +0.0 1,987,110 + Rru_A1696 0.10 -2.2 1,987,110 + Rru_A1696 0.10 +0.0 1,987,110 + Rru_A1696 0.10 +0.0 1,987,110 + Rru_A1696 0.10 +0.0 1,987,177 - Rru_A1696 0.23 +0.0 1,987,307 + Rru_A1696 0.47 +0.0 1,987,307 + Rru_A1696 0.47 +0.0 1,987,307 + Rru_A1696 0.47 -2.8 1,987,389 - Rru_A1696 0.62 +0.0 1,987,389 - Rru_A1696 0.62 -2.4 1,987,409 + Rru_A1696 0.65 +0.0 1,987,475 + Rru_A1696 0.78 +0.0 1,987,475 + Rru_A1696 0.78 -1.0 1,987,580 + +0.0 1,987,580 + -2.5 1,987,580 + +0.0 1,987,580 + -2.1 1,987,581 - +0.0 1,987,581 - +0.0 1,987,581 - -3.5 1,987,662 - +0.0
Or see this region's nucleotide sequence