Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1304

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1303 and Rru_A1304 are separated by 29 nucleotidesRru_A1304 and Rru_A1305 are separated by 9 nucleotidesRru_A1305 and Rru_A1306 are separated by 19 nucleotides Rru_A1303: Rru_A1303 - Imidazolonepropionase (NCBI), at 1,537,507 to 1,538,751 _A1303 Rru_A1304: Rru_A1304 - Urocanate hydratase (NCBI), at 1,538,781 to 1,540,451 _A1304 Rru_A1305: Rru_A1305 - Predicted transcriptional regulator (NCBI), at 1,540,461 to 1,540,757 _A1305 Rru_A1306: Rru_A1306 - Short-chain dehydrogenase/reductase SDR (NCBI), at 1,540,777 to 1,541,610 _A1306 Position (kb) 1538 1539 1540 1541Strain fitness (log2 ratio) -3 -2 -1 0 1at 1537.798 kb on + strand, within Rru_A1303at 1537.799 kb on - strand, within Rru_A1303at 1537.799 kb on - strand, within Rru_A1303at 1537.799 kb on - strand, within Rru_A1303at 1537.799 kb on - strand, within Rru_A1303at 1538.022 kb on + strand, within Rru_A1303at 1538.087 kb on - strand, within Rru_A1303at 1538.087 kb on - strand, within Rru_A1303at 1538.087 kb on - strand, within Rru_A1303at 1538.087 kb on - strand, within Rru_A1303at 1538.089 kb on - strand, within Rru_A1303at 1538.320 kb on + strand, within Rru_A1303at 1538.321 kb on - strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.395 kb on - strand, within Rru_A1303at 1538.395 kb on - strand, within Rru_A1303at 1538.970 kb on + strand, within Rru_A1304at 1538.970 kb on + strand, within Rru_A1304at 1538.970 kb on + strand, within Rru_A1304at 1538.970 kb on + strand, within Rru_A1304at 1538.971 kb on - strand, within Rru_A1304at 1538.971 kb on - strand, within Rru_A1304at 1538.971 kb on - strand, within Rru_A1304at 1538.971 kb on - strand, within Rru_A1304at 1539.163 kb on - strand, within Rru_A1304at 1539.192 kb on + strand, within Rru_A1304at 1539.192 kb on + strand, within Rru_A1304at 1539.192 kb on + strand, within Rru_A1304at 1539.193 kb on - strand, within Rru_A1304at 1539.193 kb on - strand, within Rru_A1304at 1539.193 kb on - strand, within Rru_A1304at 1539.193 kb on - strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.258 kb on + strand, within Rru_A1304at 1539.259 kb on - strand, within Rru_A1304at 1539.308 kb on + strand, within Rru_A1304at 1539.308 kb on + strand, within Rru_A1304at 1539.408 kb on + strand, within Rru_A1304at 1539.408 kb on + strand, within Rru_A1304at 1539.409 kb on - strand, within Rru_A1304at 1539.600 kb on + strand, within Rru_A1304at 1539.601 kb on - strand, within Rru_A1304at 1539.601 kb on - strand, within Rru_A1304at 1539.601 kb on - strand, within Rru_A1304at 1539.748 kb on - strand, within Rru_A1304at 1539.825 kb on + strand, within Rru_A1304at 1539.826 kb on - strand, within Rru_A1304at 1539.826 kb on - strand, within Rru_A1304at 1539.826 kb on - strand, within Rru_A1304at 1539.826 kb on - strand, within Rru_A1304at 1539.826 kb on - strand, within Rru_A1304at 1539.896 kb on + strand, within Rru_A1304at 1539.896 kb on + strand, within Rru_A1304at 1539.896 kb on + strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.900 kb on + strand, within Rru_A1304at 1539.900 kb on + strand, within Rru_A1304at 1539.900 kb on + strand, within Rru_A1304at 1539.900 kb on + strand, within Rru_A1304at 1539.901 kb on - strand, within Rru_A1304at 1539.980 kb on + strand, within Rru_A1304at 1539.980 kb on + strand, within Rru_A1304at 1540.081 kb on + strand, within Rru_A1304at 1540.450 kb on - strandat 1540.691 kb on - strand, within Rru_A1305at 1540.691 kb on - strand, within Rru_A1305at 1540.691 kb on - strand, within Rru_A1305at 1541.106 kb on + strand, within Rru_A1306at 1541.106 kb on + strand, within Rru_A1306at 1541.106 kb on + strand, within Rru_A1306at 1541.106 kb on + strand, within Rru_A1306at 1541.106 kb on + strand, within Rru_A1306at 1541.107 kb on - strand, within Rru_A1306at 1541.107 kb on - strand, within Rru_A1306at 1541.169 kb on + strand, within Rru_A1306

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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1,537,798 + Rru_A1303 0.23 +0.0
1,537,799 - Rru_A1303 0.23 +0.0
1,537,799 - Rru_A1303 0.23 +0.0
1,537,799 - Rru_A1303 0.23 +0.0
1,537,799 - Rru_A1303 0.23 +0.0
1,538,022 + Rru_A1303 0.41 -2.3
1,538,087 - Rru_A1303 0.47 +0.0
1,538,087 - Rru_A1303 0.47 +0.0
1,538,087 - Rru_A1303 0.47 +0.0
1,538,087 - Rru_A1303 0.47 +0.0
1,538,089 - Rru_A1303 0.47 +0.0
1,538,320 + Rru_A1303 0.65 +0.0
1,538,321 - Rru_A1303 0.65 +0.0
1,538,394 + Rru_A1303 0.71 +0.0
1,538,394 + Rru_A1303 0.71 +0.0
1,538,394 + Rru_A1303 0.71 +0.0
1,538,394 + Rru_A1303 0.71 +0.0
1,538,394 + Rru_A1303 0.71 -2.0
1,538,394 + Rru_A1303 0.71 -2.6
1,538,394 + Rru_A1303 0.71 +0.0
1,538,394 + Rru_A1303 0.71 +0.0
1,538,395 - Rru_A1303 0.71 +0.0
1,538,395 - Rru_A1303 0.71 +0.0
1,538,970 + Rru_A1304 0.11 +0.0
1,538,970 + Rru_A1304 0.11 -1.0
1,538,970 + Rru_A1304 0.11 -2.2
1,538,970 + Rru_A1304 0.11 +0.0
1,538,971 - Rru_A1304 0.11 +0.0
1,538,971 - Rru_A1304 0.11 +0.0
1,538,971 - Rru_A1304 0.11 +0.0
1,538,971 - Rru_A1304 0.11 +0.0
1,539,163 - Rru_A1304 0.23 +0.0
1,539,192 + Rru_A1304 0.25 +0.0
1,539,192 + Rru_A1304 0.25 +0.0
1,539,192 + Rru_A1304 0.25 +0.0
1,539,193 - Rru_A1304 0.25 +0.0
1,539,193 - Rru_A1304 0.25 +0.0
1,539,193 - Rru_A1304 0.25 +0.0
1,539,193 - Rru_A1304 0.25 +0.0
1,539,225 + Rru_A1304 0.27 +0.0
1,539,225 + Rru_A1304 0.27 -3.0
1,539,225 + Rru_A1304 0.27 -2.6
1,539,225 + Rru_A1304 0.27 -2.6
1,539,225 + Rru_A1304 0.27 +0.0
1,539,225 + Rru_A1304 0.27 -2.0
1,539,226 - Rru_A1304 0.27 +0.0
1,539,226 - Rru_A1304 0.27 +0.0
1,539,226 - Rru_A1304 0.27 -2.2
1,539,226 - Rru_A1304 0.27 -2.2
1,539,226 - Rru_A1304 0.27 +0.0
1,539,226 - Rru_A1304 0.27 +0.0
1,539,258 + Rru_A1304 0.29 +0.0
1,539,259 - Rru_A1304 0.29 -2.6
1,539,308 + Rru_A1304 0.32 -2.5
1,539,308 + Rru_A1304 0.32 -1.0
1,539,408 + Rru_A1304 0.38 +0.0
1,539,408 + Rru_A1304 0.38 -2.4
1,539,409 - Rru_A1304 0.38 +0.0
1,539,600 + Rru_A1304 0.49 -1.0
1,539,601 - Rru_A1304 0.49 -2.4
1,539,601 - Rru_A1304 0.49 +0.0
1,539,601 - Rru_A1304 0.49 +0.0
1,539,748 - Rru_A1304 0.58 +0.0
1,539,825 + Rru_A1304 0.62 +0.0
1,539,826 - Rru_A1304 0.63 +0.0
1,539,826 - Rru_A1304 0.63 +0.0
1,539,826 - Rru_A1304 0.63 -2.4
1,539,826 - Rru_A1304 0.63 +0.0
1,539,826 - Rru_A1304 0.63 +0.0
1,539,896 + Rru_A1304 0.67 -2.2
1,539,896 + Rru_A1304 0.67 -2.3
1,539,896 + Rru_A1304 0.67 +0.0
1,539,897 - Rru_A1304 0.67 +0.0
1,539,897 - Rru_A1304 0.67 +0.0
1,539,897 - Rru_A1304 0.67 +0.0
1,539,897 - Rru_A1304 0.67 -2.9
1,539,897 - Rru_A1304 0.67 -1.9
1,539,897 - Rru_A1304 0.67 +0.0
1,539,900 + Rru_A1304 0.67 +0.0
1,539,900 + Rru_A1304 0.67 -1.7
1,539,900 + Rru_A1304 0.67 +0.0
1,539,900 + Rru_A1304 0.67 +0.0
1,539,901 - Rru_A1304 0.67 +0.0
1,539,980 + Rru_A1304 0.72 -2.2
1,539,980 + Rru_A1304 0.72 -2.5
1,540,081 + Rru_A1304 0.78 +0.0
1,540,450 - -3.0
1,540,691 - Rru_A1305 0.77 +0.0
1,540,691 - Rru_A1305 0.77 +0.0
1,540,691 - Rru_A1305 0.77 +0.0
1,541,106 + Rru_A1306 0.39 +0.0
1,541,106 + Rru_A1306 0.39 -2.2
1,541,106 + Rru_A1306 0.39 +0.0
1,541,106 + Rru_A1306 0.39 +0.0
1,541,106 + Rru_A1306 0.39 +0.0
1,541,107 - Rru_A1306 0.40 +0.0
1,541,107 - Rru_A1306 0.40 +0.0
1,541,169 + Rru_A1306 0.47 -3.3

Or see this region's nucleotide sequence