Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1125 and Rru_A1126 are separated by 605 nucleotides Rru_A1126 and Rru_A1127 are separated by 23 nucleotides
Rru_A1125: Rru_A1125 - Transcriptional Regulator, XRE family (NCBI), at 1,326,652 to 1,326,966
_A1125
Rru_A1126: Rru_A1126 - ISBm1, transposase orfA (NCBI), at 1,327,572 to 1,328,000
_A1126
Rru_A1127: Rru_A1127 - ISBm1, transposase orfB (NCBI), at 1,328,024 to 1,328,332
_A1127
Position (kb) 1327
1328
1329 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1326.605 kb on + strand at 1326.606 kb on - strand at 1326.606 kb on - strand at 1326.606 kb on - strand at 1326.615 kb on - strand at 1326.641 kb on + strand at 1326.641 kb on + strand at 1326.658 kb on + strand at 1326.658 kb on + strand at 1326.658 kb on + strand at 1326.659 kb on - strand at 1326.659 kb on - strand at 1326.659 kb on - strand at 1326.760 kb on - strand, within Rru_A1125 at 1327.046 kb on + strand at 1327.071 kb on + strand at 1327.222 kb on + strand at 1327.340 kb on + strand at 1327.340 kb on + strand at 1327.341 kb on - strand at 1327.387 kb on - strand at 1327.404 kb on + strand at 1327.404 kb on + strand at 1327.404 kb on + strand at 1327.404 kb on + strand at 1327.405 kb on - strand at 1327.405 kb on - strand at 1327.405 kb on - strand at 1327.405 kb on - strand at 1327.412 kb on + strand at 1327.412 kb on + strand at 1327.413 kb on - strand at 1327.500 kb on + strand at 1327.515 kb on + strand at 1327.515 kb on + strand at 1327.516 kb on - strand at 1327.516 kb on - strand at 1327.516 kb on - strand at 1327.602 kb on + strand at 1327.603 kb on - strand at 1327.603 kb on - strand at 1327.752 kb on - strand, within Rru_A1126 at 1327.758 kb on + strand, within Rru_A1126 at 1327.759 kb on - strand, within Rru_A1126 at 1328.020 kb on + strand at 1328.021 kb on - strand at 1328.021 kb on - strand at 1328.021 kb on - strand at 1328.087 kb on + strand, within Rru_A1127 at 1328.087 kb on + strand, within Rru_A1127 at 1328.087 kb on + strand, within Rru_A1127 at 1328.087 kb on + strand, within Rru_A1127 at 1328.088 kb on - strand, within Rru_A1127 at 1328.088 kb on - strand, within Rru_A1127 at 1328.331 kb on - strand at 1328.347 kb on - strand at 1328.429 kb on + strand at 1328.440 kb on + strand at 1328.441 kb on - strand at 1328.482 kb on + strand at 1328.676 kb on + strand at 1328.758 kb on + strand at 1328.777 kb on + strand at 1328.901 kb on + strand at 1328.901 kb on + strand at 1328.964 kb on + strand at 1328.965 kb on - strand at 1328.979 kb on + strand at 1328.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 1,326,605 + -0.0 1,326,606 - -1.0 1,326,606 - -1.0 1,326,606 - -2.4 1,326,615 - -2.1 1,326,641 + -2.0 1,326,641 + -0.0 1,326,658 + -2.3 1,326,658 + -0.0 1,326,658 + -0.0 1,326,659 - -1.9 1,326,659 - -1.6 1,326,659 - -5.0 1,326,760 - Rru_A1125 0.34 -0.0 1,327,046 + -1.8 1,327,071 + -3.1 1,327,222 + -1.3 1,327,340 + -0.0 1,327,340 + -1.0 1,327,341 - -0.0 1,327,387 - -0.0 1,327,404 + -2.4 1,327,404 + -0.0 1,327,404 + -0.0 1,327,404 + -0.0 1,327,405 - -0.0 1,327,405 - -0.0 1,327,405 - -1.9 1,327,405 - -1.6 1,327,412 + -0.0 1,327,412 + -0.0 1,327,413 - -0.0 1,327,500 + -0.0 1,327,515 + -1.0 1,327,515 + -0.0 1,327,516 - -0.0 1,327,516 - -2.6 1,327,516 - -0.0 1,327,602 + -0.0 1,327,603 - -0.0 1,327,603 - -0.0 1,327,752 - Rru_A1126 0.42 -2.4 1,327,758 + Rru_A1126 0.43 -0.0 1,327,759 - Rru_A1126 0.44 -0.0 1,328,020 + -0.0 1,328,021 - -0.0 1,328,021 - -0.0 1,328,021 - -0.0 1,328,087 + Rru_A1127 0.20 -2.9 1,328,087 + Rru_A1127 0.20 -0.0 1,328,087 + Rru_A1127 0.20 -0.0 1,328,087 + Rru_A1127 0.20 -4.0 1,328,088 - Rru_A1127 0.21 -1.0 1,328,088 - Rru_A1127 0.21 -1.1 1,328,331 - -0.0 1,328,347 - -0.0 1,328,429 + -2.2 1,328,440 + -0.0 1,328,441 - -0.0 1,328,482 + -0.0 1,328,676 + -0.0 1,328,758 + -0.0 1,328,777 + -1.6 1,328,901 + -0.0 1,328,901 + -0.0 1,328,964 + -0.0 1,328,965 - -0.0 1,328,979 + -0.0 1,328,998 + -0.0
Or see this region's nucleotide sequence