Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1054 and Rru_A1055 are separated by 86 nucleotides Rru_A1055 and Rru_A1056 are separated by 238 nucleotides
Rru_A1054: Rru_A1054 - hypothetical protein (NCBI), at 1,247,554 to 1,248,885
_A1054
Rru_A1055: Rru_A1055 - Protein of unknown function DUF1013 (NCBI), at 1,248,972 to 1,249,592
_A1055
Rru_A1056: Rru_A1056 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 1,249,831 to 1,250,835
_A1056
Position (kb) 1248
1249
1250 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1247.992 kb on + strand, within Rru_A1054 at 1247.993 kb on - strand, within Rru_A1054 at 1248.060 kb on + strand, within Rru_A1054 at 1248.060 kb on + strand, within Rru_A1054 at 1248.060 kb on + strand, within Rru_A1054 at 1248.061 kb on - strand, within Rru_A1054 at 1248.061 kb on - strand, within Rru_A1054 at 1248.061 kb on - strand, within Rru_A1054 at 1248.061 kb on - strand, within Rru_A1054 at 1248.562 kb on + strand, within Rru_A1054 at 1248.562 kb on + strand, within Rru_A1054 at 1248.562 kb on + strand, within Rru_A1054 at 1248.562 kb on + strand, within Rru_A1054 at 1248.563 kb on - strand, within Rru_A1054 at 1248.563 kb on - strand, within Rru_A1054 at 1248.883 kb on + strand at 1248.883 kb on + strand at 1248.884 kb on - strand at 1249.009 kb on + strand at 1249.010 kb on - strand at 1249.010 kb on - strand at 1249.010 kb on - strand at 1249.041 kb on - strand, within Rru_A1055 at 1249.042 kb on + strand, within Rru_A1055 at 1249.042 kb on + strand, within Rru_A1055 at 1249.313 kb on - strand, within Rru_A1055 at 1249.784 kb on - strand at 1249.784 kb on - strand at 1249.784 kb on - strand at 1249.784 kb on - strand at 1249.784 kb on - strand at 1250.148 kb on + strand, within Rru_A1056 at 1250.149 kb on - strand, within Rru_A1056 at 1250.151 kb on - strand, within Rru_A1056 at 1250.151 kb on - strand, within Rru_A1056 at 1250.222 kb on + strand, within Rru_A1056 at 1250.223 kb on - strand, within Rru_A1056 at 1250.237 kb on + strand, within Rru_A1056 at 1250.238 kb on - strand, within Rru_A1056 at 1250.306 kb on + strand, within Rru_A1056 at 1250.306 kb on + strand, within Rru_A1056 at 1250.307 kb on - strand, within Rru_A1056 at 1250.307 kb on - strand, within Rru_A1056 at 1250.307 kb on - strand, within Rru_A1056 at 1250.307 kb on - strand, within Rru_A1056 at 1250.433 kb on + strand, within Rru_A1056 at 1250.433 kb on + strand, within Rru_A1056 at 1250.519 kb on + strand, within Rru_A1056 at 1250.520 kb on - strand, within Rru_A1056 at 1250.520 kb on - strand, within Rru_A1056
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 1,247,992 + Rru_A1054 0.33 -1.4 1,247,993 - Rru_A1054 0.33 -0.8 1,248,060 + Rru_A1054 0.38 -2.1 1,248,060 + Rru_A1054 0.38 +0.0 1,248,060 + Rru_A1054 0.38 +0.0 1,248,061 - Rru_A1054 0.38 -2.2 1,248,061 - Rru_A1054 0.38 +0.0 1,248,061 - Rru_A1054 0.38 +0.0 1,248,061 - Rru_A1054 0.38 +0.0 1,248,562 + Rru_A1054 0.76 +0.0 1,248,562 + Rru_A1054 0.76 -2.0 1,248,562 + Rru_A1054 0.76 +0.0 1,248,562 + Rru_A1054 0.76 +0.0 1,248,563 - Rru_A1054 0.76 +0.0 1,248,563 - Rru_A1054 0.76 +0.0 1,248,883 + +0.0 1,248,883 + -2.1 1,248,884 - +0.0 1,249,009 + +0.0 1,249,010 - +0.0 1,249,010 - +0.0 1,249,010 - -3.0 1,249,041 - Rru_A1055 0.11 -3.1 1,249,042 + Rru_A1055 0.11 +0.0 1,249,042 + Rru_A1055 0.11 +0.0 1,249,313 - Rru_A1055 0.55 +0.0 1,249,784 - -1.8 1,249,784 - +0.0 1,249,784 - +0.0 1,249,784 - +0.0 1,249,784 - -2.2 1,250,148 + Rru_A1056 0.32 -2.0 1,250,149 - Rru_A1056 0.32 +0.0 1,250,151 - Rru_A1056 0.32 -2.5 1,250,151 - Rru_A1056 0.32 +0.0 1,250,222 + Rru_A1056 0.39 +0.0 1,250,223 - Rru_A1056 0.39 +0.0 1,250,237 + Rru_A1056 0.40 +0.0 1,250,238 - Rru_A1056 0.40 +0.0 1,250,306 + Rru_A1056 0.47 -2.9 1,250,306 + Rru_A1056 0.47 +0.0 1,250,307 - Rru_A1056 0.47 +0.0 1,250,307 - Rru_A1056 0.47 -2.4 1,250,307 - Rru_A1056 0.47 +0.0 1,250,307 - Rru_A1056 0.47 -2.3 1,250,433 + Rru_A1056 0.60 -2.6 1,250,433 + Rru_A1056 0.60 +0.0 1,250,519 + Rru_A1056 0.68 +0.0 1,250,520 - Rru_A1056 0.69 +0.0 1,250,520 - Rru_A1056 0.69 +0.0
Or see this region's nucleotide sequence