Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0823 and Rru_A0824 are separated by 193 nucleotides Rru_A0824 and Rru_A0825 are separated by 214 nucleotides Rru_A0825 and Rru_A0826 are separated by 73 nucleotides Rru_A0826 and Rru_A0827 are separated by 4 nucleotides Rru_A0827 and Rru_A0828 are separated by 248 nucleotides
Rru_A0823: Rru_A0823 - Cupin region (NCBI), at 978,773 to 979,678
_A0823
Rru_A0824: Rru_A0824 - no description, at 979,872 to 980,066
_A0824
Rru_A0825: Rru_A0825 - putative transposase (NCBI), at 980,281 to 980,577
_A0825
Rru_A0826: Rru_A0826 - hypothetical protein (NCBI), at 980,651 to 980,821
_A0826
Rru_A0827: Rru_A0827 - hypothetical protein (NCBI), at 980,826 to 981,182
_A0827
Rru_A0828: Rru_A0828 - CRISPR-associated helicase Cas3, core (NCBI), at 981,431 to 983,689
_A0828
Position (kb) 980
981 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 979.288 kb on + strand, within Rru_A0823 at 979.289 kb on - strand, within Rru_A0823 at 979.417 kb on + strand, within Rru_A0823 at 979.418 kb on - strand, within Rru_A0823 at 979.418 kb on - strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.702 kb on + strand at 979.702 kb on + strand at 979.704 kb on + strand at 979.704 kb on + strand at 979.704 kb on + strand at 979.705 kb on - strand at 979.708 kb on + strand at 979.708 kb on + strand at 979.708 kb on + strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.750 kb on + strand at 979.750 kb on + strand at 979.750 kb on + strand at 979.751 kb on - strand at 979.763 kb on + strand at 979.873 kb on + strand at 979.990 kb on + strand, within Rru_A0824 at 979.990 kb on + strand, within Rru_A0824 at 979.991 kb on - strand, within Rru_A0824 at 979.991 kb on - strand, within Rru_A0824 at 980.087 kb on + strand at 980.087 kb on + strand at 980.089 kb on + strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.200 kb on + strand at 980.212 kb on + strand at 980.458 kb on + strand, within Rru_A0825 at 980.458 kb on + strand, within Rru_A0825 at 980.470 kb on + strand, within Rru_A0825 at 980.470 kb on + strand, within Rru_A0825 at 980.525 kb on + strand, within Rru_A0825 at 980.526 kb on - strand, within Rru_A0825 at 980.819 kb on + strand at 980.820 kb on - strand at 980.825 kb on + strand at 980.825 kb on + strand at 980.825 kb on + strand at 980.825 kb on + strand at 980.825 kb on + strand at 980.826 kb on - strand at 980.826 kb on - strand at 980.826 kb on - strand at 980.912 kb on + strand, within Rru_A0827 at 980.913 kb on - strand, within Rru_A0827 at 980.973 kb on - strand, within Rru_A0827 at 980.973 kb on - strand, within Rru_A0827 at 980.977 kb on + strand, within Rru_A0827 at 980.977 kb on + strand, within Rru_A0827 at 980.977 kb on + strand, within Rru_A0827 at 980.978 kb on - strand, within Rru_A0827 at 980.980 kb on + strand, within Rru_A0827 at 980.981 kb on - strand, within Rru_A0827 at 981.014 kb on + strand, within Rru_A0827 at 981.014 kb on + strand, within Rru_A0827 at 981.015 kb on - strand, within Rru_A0827 at 981.187 kb on + strand at 981.272 kb on + strand at 981.362 kb on - strand at 981.413 kb on - strand at 981.434 kb on + strand at 981.435 kb on - strand at 981.437 kb on + strand at 981.437 kb on + strand at 981.438 kb on - strand at 981.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 979,288 + Rru_A0823 0.57 -0.0 979,289 - Rru_A0823 0.57 -0.0 979,417 + Rru_A0823 0.71 -1.7 979,418 - Rru_A0823 0.71 -1.2 979,418 - Rru_A0823 0.71 -1.0 979,499 + Rru_A0823 0.80 -0.0 979,499 + Rru_A0823 0.80 -0.0 979,499 + Rru_A0823 0.80 -1.7 979,499 + Rru_A0823 0.80 -0.0 979,500 - Rru_A0823 0.80 -0.0 979,500 - Rru_A0823 0.80 -0.0 979,500 - Rru_A0823 0.80 -0.0 979,500 - Rru_A0823 0.80 -2.1 979,702 + -0.0 979,702 + -0.0 979,704 + -2.1 979,704 + -1.0 979,704 + -0.0 979,705 - -0.0 979,708 + -0.0 979,708 + -0.0 979,708 + -1.6 979,709 - -2.0 979,709 - -0.9 979,709 - -0.0 979,709 - -1.0 979,709 - -2.1 979,709 - -0.0 979,709 - -0.0 979,709 - -2.0 979,709 - -0.0 979,709 - -2.8 979,709 - -0.0 979,709 - -0.0 979,709 - -0.0 979,750 + -0.0 979,750 + -0.0 979,750 + -1.6 979,751 - -0.0 979,763 + -0.0 979,873 + -0.4 979,990 + Rru_A0824 0.61 -2.0 979,990 + Rru_A0824 0.61 -0.0 979,991 - Rru_A0824 0.61 -0.0 979,991 - Rru_A0824 0.61 -2.4 980,087 + -0.0 980,087 + -1.5 980,089 + -0.0 980,178 - -0.0 980,178 - -0.0 980,178 - -0.0 980,178 - -0.0 980,178 - -0.0 980,200 + -0.0 980,212 + -0.0 980,458 + Rru_A0825 0.60 -0.0 980,458 + Rru_A0825 0.60 -0.0 980,470 + Rru_A0825 0.64 -0.0 980,470 + Rru_A0825 0.64 -0.0 980,525 + Rru_A0825 0.82 -0.0 980,526 - Rru_A0825 0.82 -0.0 980,819 + -0.0 980,820 - -1.6 980,825 + -0.0 980,825 + -2.1 980,825 + -0.0 980,825 + -2.6 980,825 + -0.0 980,826 - -0.0 980,826 - -0.0 980,826 - -0.0 980,912 + Rru_A0827 0.24 -3.2 980,913 - Rru_A0827 0.24 -2.4 980,973 - Rru_A0827 0.41 -0.0 980,973 - Rru_A0827 0.41 -2.4 980,977 + Rru_A0827 0.42 -0.0 980,977 + Rru_A0827 0.42 -0.0 980,977 + Rru_A0827 0.42 -0.0 980,978 - Rru_A0827 0.43 -0.0 980,980 + Rru_A0827 0.43 -0.0 980,981 - Rru_A0827 0.43 -0.0 981,014 + Rru_A0827 0.53 -0.0 981,014 + Rru_A0827 0.53 -0.0 981,015 - Rru_A0827 0.53 -0.0 981,187 + -0.6 981,272 + -0.0 981,362 - -1.9 981,413 - -3.3 981,434 + -0.0 981,435 - -1.7 981,437 + -2.2 981,437 + -0.0 981,438 - -0.0 981,438 - -0.0
Or see this region's nucleotide sequence