Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0793

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0792 and Rru_A0793 are separated by 219 nucleotidesRru_A0793 and Rru_A0794 are separated by 8 nucleotides Rru_A0792: Rru_A0792 - Serine O-acetyltransferase (NCBI), at 945,359 to 946,225 _A0792 Rru_A0793: Rru_A0793 - Nitrogenase (NCBI), at 946,445 to 947,845 _A0793 Rru_A0794: Rru_A0794 - Nitrogenase (NCBI), at 947,854 to 949,389 _A0794 Position (kb) 946 947 948Strain fitness (log2 ratio) -3 -2 -1 0 1at 945.533 kb on - strand, within Rru_A0792at 945.855 kb on + strand, within Rru_A0792at 945.855 kb on + strand, within Rru_A0792at 945.856 kb on - strand, within Rru_A0792at 946.104 kb on + strand, within Rru_A0792at 946.105 kb on - strand, within Rru_A0792at 946.105 kb on - strand, within Rru_A0792at 946.105 kb on - strand, within Rru_A0792at 946.252 kb on - strandat 946.358 kb on + strandat 946.359 kb on - strandat 946.359 kb on - strandat 946.371 kb on + strandat 946.387 kb on + strandat 946.473 kb on + strandat 946.515 kb on + strandat 946.515 kb on + strandat 946.515 kb on + strandat 946.516 kb on - strandat 946.539 kb on + strandat 946.539 kb on + strandat 946.540 kb on - strandat 946.540 kb on - strandat 946.540 kb on - strandat 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.726 kb on - strand, within Rru_A0793at 946.738 kb on + strand, within Rru_A0793at 946.834 kb on + strand, within Rru_A0793at 946.835 kb on - strand, within Rru_A0793at 946.835 kb on - strand, within Rru_A0793at 946.836 kb on + strand, within Rru_A0793at 946.837 kb on - strand, within Rru_A0793at 946.884 kb on + strand, within Rru_A0793at 946.885 kb on - strand, within Rru_A0793at 946.893 kb on + strand, within Rru_A0793at 946.894 kb on - strand, within Rru_A0793at 946.917 kb on + strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.926 kb on + strand, within Rru_A0793at 946.927 kb on - strand, within Rru_A0793at 947.065 kb on - strand, within Rru_A0793at 947.065 kb on - strand, within Rru_A0793at 947.122 kb on + strand, within Rru_A0793at 947.185 kb on + strand, within Rru_A0793at 947.287 kb on + strand, within Rru_A0793at 947.288 kb on - strand, within Rru_A0793at 947.288 kb on - strand, within Rru_A0793at 947.381 kb on - strand, within Rru_A0793at 947.381 kb on - strand, within Rru_A0793at 947.381 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.483 kb on - strand, within Rru_A0793at 947.644 kb on + strand, within Rru_A0793at 947.645 kb on - strand, within Rru_A0793at 947.645 kb on - strand, within Rru_A0793at 947.646 kb on + strand, within Rru_A0793at 947.646 kb on + strand, within Rru_A0793at 947.647 kb on - strand, within Rru_A0793at 947.647 kb on - strand, within Rru_A0793at 947.647 kb on - strand, within Rru_A0793at 947.755 kb on + strandat 947.755 kb on + strandat 947.755 kb on + strandat 947.756 kb on - strandat 947.756 kb on - strandat 947.756 kb on - strandat 947.756 kb on - strandat 947.757 kb on + strandat 947.757 kb on + strandat 947.758 kb on - strandat 947.758 kb on - strandat 947.758 kb on - strandat 948.039 kb on + strand, within Rru_A0794at 948.039 kb on + strand, within Rru_A0794at 948.039 kb on + strand, within Rru_A0794at 948.149 kb on + strand, within Rru_A0794at 948.150 kb on - strand, within Rru_A0794at 948.200 kb on + strand, within Rru_A0794at 948.201 kb on - strand, within Rru_A0794at 948.201 kb on - strand, within Rru_A0794at 948.251 kb on + strand, within Rru_A0794at 948.252 kb on - strand, within Rru_A0794at 948.252 kb on - strand, within Rru_A0794at 948.332 kb on + strand, within Rru_A0794at 948.332 kb on + strand, within Rru_A0794at 948.333 kb on - strand, within Rru_A0794at 948.428 kb on + strand, within Rru_A0794at 948.428 kb on + strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.503 kb on + strand, within Rru_A0794at 948.563 kb on + strand, within Rru_A0794at 948.563 kb on + strand, within Rru_A0794at 948.564 kb on - strand, within Rru_A0794at 948.564 kb on - strand, within Rru_A0794at 948.579 kb on - strand, within Rru_A0794at 948.650 kb on + strand, within Rru_A0794at 948.650 kb on + strand, within Rru_A0794at 948.651 kb on - strand, within Rru_A0794at 948.651 kb on - strand, within Rru_A0794at 948.841 kb on + strand, within Rru_A0794at 948.842 kb on - strand, within Rru_A0794

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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945,533 - Rru_A0792 0.20 -0.0
945,855 + Rru_A0792 0.57 -0.0
945,855 + Rru_A0792 0.57 -0.0
945,856 - Rru_A0792 0.57 -0.0
946,104 + Rru_A0792 0.86 -0.0
946,105 - Rru_A0792 0.86 -0.0
946,105 - Rru_A0792 0.86 -0.0
946,105 - Rru_A0792 0.86 -2.3
946,252 - -1.7
946,358 + -0.0
946,359 - -2.3
946,359 - -2.5
946,371 + -1.6
946,387 + -0.0
946,473 + -0.0
946,515 + -0.0
946,515 + -0.0
946,515 + -0.0
946,516 - -0.0
946,539 + -0.0
946,539 + -0.0
946,540 - -0.0
946,540 - -0.0
946,540 - -0.0
946,671 + Rru_A0793 0.16 -0.0
946,671 + Rru_A0793 0.16 -2.4
946,671 + Rru_A0793 0.16 -0.0
946,671 + Rru_A0793 0.16 -2.7
946,671 + Rru_A0793 0.16 -1.0
946,672 - Rru_A0793 0.16 -0.0
946,672 - Rru_A0793 0.16 -0.0
946,672 - Rru_A0793 0.16 -0.0
946,672 - Rru_A0793 0.16 -2.5
946,672 - Rru_A0793 0.16 -0.0
946,672 - Rru_A0793 0.16 -1.6
946,726 - Rru_A0793 0.20 -2.4
946,738 + Rru_A0793 0.21 -0.0
946,834 + Rru_A0793 0.28 -0.0
946,835 - Rru_A0793 0.28 -2.1
946,835 - Rru_A0793 0.28 -0.0
946,836 + Rru_A0793 0.28 -1.0
946,837 - Rru_A0793 0.28 -0.0
946,884 + Rru_A0793 0.31 -0.0
946,885 - Rru_A0793 0.31 -0.0
946,893 + Rru_A0793 0.32 -2.2
946,894 - Rru_A0793 0.32 -1.9
946,917 + Rru_A0793 0.34 -2.2
946,918 - Rru_A0793 0.34 -2.0
946,918 - Rru_A0793 0.34 -0.0
946,918 - Rru_A0793 0.34 -3.5
946,926 + Rru_A0793 0.34 -0.0
946,927 - Rru_A0793 0.34 -0.0
947,065 - Rru_A0793 0.44 -0.0
947,065 - Rru_A0793 0.44 -0.0
947,122 + Rru_A0793 0.48 -0.0
947,185 + Rru_A0793 0.53 -2.1
947,287 + Rru_A0793 0.60 -0.0
947,288 - Rru_A0793 0.60 -2.7
947,288 - Rru_A0793 0.60 -0.0
947,381 - Rru_A0793 0.67 -0.0
947,381 - Rru_A0793 0.67 -0.0
947,381 - Rru_A0793 0.67 -0.0
947,410 - Rru_A0793 0.69 -0.0
947,410 - Rru_A0793 0.69 -0.0
947,410 - Rru_A0793 0.69 -0.0
947,410 - Rru_A0793 0.69 -1.7
947,483 - Rru_A0793 0.74 -0.0
947,644 + Rru_A0793 0.86 -2.5
947,645 - Rru_A0793 0.86 -2.6
947,645 - Rru_A0793 0.86 -0.0
947,646 + Rru_A0793 0.86 -0.0
947,646 + Rru_A0793 0.86 -0.0
947,647 - Rru_A0793 0.86 -0.0
947,647 - Rru_A0793 0.86 -2.3
947,647 - Rru_A0793 0.86 -2.2
947,755 + -3.1
947,755 + -0.0
947,755 + -0.0
947,756 - -1.9
947,756 - -2.1
947,756 - -0.0
947,756 - -0.0
947,757 + -0.0
947,757 + -0.0
947,758 - -0.0
947,758 - -0.0
947,758 - -0.0
948,039 + Rru_A0794 0.12 -2.3
948,039 + Rru_A0794 0.12 -1.0
948,039 + Rru_A0794 0.12 -2.3
948,149 + Rru_A0794 0.19 -0.0
948,150 - Rru_A0794 0.19 -0.0
948,200 + Rru_A0794 0.23 -0.0
948,201 - Rru_A0794 0.23 -2.1
948,201 - Rru_A0794 0.23 -0.0
948,251 + Rru_A0794 0.26 -2.2
948,252 - Rru_A0794 0.26 -0.0
948,252 - Rru_A0794 0.26 -0.0
948,332 + Rru_A0794 0.31 -0.0
948,332 + Rru_A0794 0.31 -0.0
948,333 - Rru_A0794 0.31 -0.0
948,428 + Rru_A0794 0.37 -0.0
948,428 + Rru_A0794 0.37 -0.0
948,429 - Rru_A0794 0.37 -2.9
948,429 - Rru_A0794 0.37 -2.4
948,429 - Rru_A0794 0.37 -0.0
948,503 + Rru_A0794 0.42 -0.0
948,563 + Rru_A0794 0.46 -0.0
948,563 + Rru_A0794 0.46 -0.0
948,564 - Rru_A0794 0.46 -0.0
948,564 - Rru_A0794 0.46 -0.0
948,579 - Rru_A0794 0.47 -2.8
948,650 + Rru_A0794 0.52 -0.0
948,650 + Rru_A0794 0.52 -2.3
948,651 - Rru_A0794 0.52 -2.3
948,651 - Rru_A0794 0.52 -0.0
948,841 + Rru_A0794 0.64 -0.0
948,842 - Rru_A0794 0.64 -2.5

Or see this region's nucleotide sequence