Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0769 and Rru_A0770 are separated by 317 nucleotides
Rru_A0769: Rru_A0769 - extracellular solute-binding protein, family 1 (NCBI), at 907,223 to 908,266
_A0769
Rru_A0770: Rru_A0770 - Peptidase M23B (NCBI), at 908,584 to 910,185
_A0770
Position (kb) 908
909
910
911 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 907.590 kb on + strand, within Rru_A0769 at 907.591 kb on - strand, within Rru_A0769 at 907.593 kb on + strand, within Rru_A0769 at 907.593 kb on + strand, within Rru_A0769 at 907.593 kb on + strand, within Rru_A0769 at 907.594 kb on - strand, within Rru_A0769 at 907.761 kb on + strand, within Rru_A0769 at 907.762 kb on - strand, within Rru_A0769 at 907.762 kb on - strand, within Rru_A0769 at 907.825 kb on - strand, within Rru_A0769 at 907.825 kb on - strand, within Rru_A0769 at 907.825 kb on - strand, within Rru_A0769 at 907.933 kb on + strand, within Rru_A0769 at 907.933 kb on + strand, within Rru_A0769 at 907.934 kb on - strand, within Rru_A0769 at 907.934 kb on - strand, within Rru_A0769 at 907.934 kb on - strand, within Rru_A0769 at 908.163 kb on + strand at 908.163 kb on + strand at 908.163 kb on + strand at 908.163 kb on + strand at 908.163 kb on + strand at 908.163 kb on + strand at 908.163 kb on + strand at 908.163 kb on + strand at 908.163 kb on + strand at 908.164 kb on - strand at 908.164 kb on - strand at 908.164 kb on - strand at 908.164 kb on - strand at 908.164 kb on - strand at 908.164 kb on - strand at 908.271 kb on + strand at 908.271 kb on + strand at 908.271 kb on + strand at 908.324 kb on - strand at 908.324 kb on - strand at 908.585 kb on + strand at 908.585 kb on + strand at 908.585 kb on + strand at 908.585 kb on + strand at 908.586 kb on - strand at 908.856 kb on + strand, within Rru_A0770 at 908.856 kb on + strand, within Rru_A0770 at 908.864 kb on + strand, within Rru_A0770 at 908.865 kb on - strand, within Rru_A0770 at 908.865 kb on - strand, within Rru_A0770 at 908.876 kb on + strand, within Rru_A0770 at 908.877 kb on - strand, within Rru_A0770 at 908.903 kb on + strand, within Rru_A0770 at 909.000 kb on + strand, within Rru_A0770 at 909.000 kb on + strand, within Rru_A0770 at 909.001 kb on - strand, within Rru_A0770 at 909.120 kb on - strand, within Rru_A0770 at 909.120 kb on - strand, within Rru_A0770 at 909.141 kb on + strand, within Rru_A0770 at 909.142 kb on - strand, within Rru_A0770 at 909.237 kb on - strand, within Rru_A0770 at 909.237 kb on - strand, within Rru_A0770 at 909.239 kb on + strand, within Rru_A0770 at 909.240 kb on - strand, within Rru_A0770 at 909.303 kb on - strand, within Rru_A0770 at 909.308 kb on + strand, within Rru_A0770 at 909.308 kb on + strand, within Rru_A0770 at 909.308 kb on + strand, within Rru_A0770 at 909.308 kb on + strand, within Rru_A0770 at 910.045 kb on - strand at 910.109 kb on + strand at 910.110 kb on - strand at 910.155 kb on + strand at 910.156 kb on - strand at 910.156 kb on - strand at 910.293 kb on + strand at 910.294 kb on - strand at 910.356 kb on + strand at 910.356 kb on + strand at 910.624 kb on + strand at 910.624 kb on + strand at 910.625 kb on - strand at 910.634 kb on + strand at 910.725 kb on - strand at 911.145 kb on + strand at 911.146 kb on - strand at 911.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 907,590 + Rru_A0769 0.35 -0.0 907,591 - Rru_A0769 0.35 -1.4 907,593 + Rru_A0769 0.35 -2.0 907,593 + Rru_A0769 0.35 -2.4 907,593 + Rru_A0769 0.35 -1.8 907,594 - Rru_A0769 0.36 -0.0 907,761 + Rru_A0769 0.52 -0.0 907,762 - Rru_A0769 0.52 -0.0 907,762 - Rru_A0769 0.52 -0.0 907,825 - Rru_A0769 0.58 -0.0 907,825 - Rru_A0769 0.58 -0.0 907,825 - Rru_A0769 0.58 -0.0 907,933 + Rru_A0769 0.68 -0.0 907,933 + Rru_A0769 0.68 -1.0 907,934 - Rru_A0769 0.68 -2.1 907,934 - Rru_A0769 0.68 -1.7 907,934 - Rru_A0769 0.68 -0.0 908,163 + -0.0 908,163 + -0.0 908,163 + -1.0 908,163 + -2.9 908,163 + -0.0 908,163 + -2.3 908,163 + -0.0 908,163 + -1.9 908,163 + -0.0 908,164 - -0.0 908,164 - -0.0 908,164 - -0.0 908,164 - -2.1 908,164 - -0.0 908,164 - -0.0 908,271 + -1.7 908,271 + -1.9 908,271 + -0.0 908,324 - -1.0 908,324 - -0.0 908,585 + -0.0 908,585 + -0.5 908,585 + -0.0 908,585 + -0.0 908,586 - -2.7 908,856 + Rru_A0770 0.17 -0.0 908,856 + Rru_A0770 0.17 -0.0 908,864 + Rru_A0770 0.17 -0.6 908,865 - Rru_A0770 0.18 -1.3 908,865 - Rru_A0770 0.18 -0.0 908,876 + Rru_A0770 0.18 -0.0 908,877 - Rru_A0770 0.18 -0.0 908,903 + Rru_A0770 0.20 -0.9 909,000 + Rru_A0770 0.26 -0.0 909,000 + Rru_A0770 0.26 -0.0 909,001 - Rru_A0770 0.26 -1.4 909,120 - Rru_A0770 0.33 -0.5 909,120 - Rru_A0770 0.33 -0.0 909,141 + Rru_A0770 0.35 +0.4 909,142 - Rru_A0770 0.35 -0.0 909,237 - Rru_A0770 0.41 -0.0 909,237 - Rru_A0770 0.41 -0.0 909,239 + Rru_A0770 0.41 -0.0 909,240 - Rru_A0770 0.41 -0.0 909,303 - Rru_A0770 0.45 -0.0 909,308 + Rru_A0770 0.45 -0.3 909,308 + Rru_A0770 0.45 +0.3 909,308 + Rru_A0770 0.45 -1.6 909,308 + Rru_A0770 0.45 -0.5 910,045 - -1.6 910,109 + -1.0 910,110 - -0.0 910,155 + -0.4 910,156 - -0.0 910,156 - -0.0 910,293 + -0.0 910,294 - -0.8 910,356 + -0.0 910,356 + -0.0 910,624 + -0.0 910,624 + -2.0 910,625 - -2.1 910,634 + -0.0 910,725 - -0.0 911,145 + -2.1 911,146 - -0.0 911,153 - -0.0
Or see this region's nucleotide sequence