Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0737

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0736 and Rru_A0737 are separated by 67 nucleotidesRru_A0737 and Rru_A0738 are separated by 87 nucleotidesRru_A0738 and Rru_A0739 overlap by 4 nucleotides Rru_A0736: Rru_A0736 - hypothetical protein (NCBI), at 862,293 to 863,219 _A0736 Rru_A0737: Rru_A0737 - Phosphoribosyltransferase (NCBI), at 863,287 to 864,027 _A0737 Rru_A0738: Rru_A0738 - Glutaredoxin, GrxC (NCBI), at 864,115 to 864,381 _A0738 Rru_A0739: Rru_A0739 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI), at 864,378 to 865,217 _A0739 Position (kb) 863 864 865Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 863.229 kb on + strandat 863.230 kb on - strandat 863.230 kb on - strandat 863.230 kb on - strandat 863.232 kb on - strandat 863.232 kb on - strandat 863.232 kb on - strandat 863.232 kb on - strandat 863.548 kb on + strand, within Rru_A0737at 863.549 kb on - strand, within Rru_A0737at 863.716 kb on + strand, within Rru_A0737at 863.717 kb on - strand, within Rru_A0737at 863.717 kb on - strand, within Rru_A0737at 863.718 kb on + strand, within Rru_A0737at 863.718 kb on + strand, within Rru_A0737at 863.719 kb on - strand, within Rru_A0737at 863.719 kb on - strand, within Rru_A0737at 864.064 kb on + strandat 864.065 kb on - strandat 864.065 kb on - strandat 864.065 kb on - strandat 864.065 kb on - strandat 864.067 kb on - strandat 864.068 kb on + strandat 864.068 kb on + strandat 864.069 kb on - strandat 864.069 kb on - strandat 864.069 kb on - strandat 864.069 kb on - strandat 864.110 kb on + strandat 864.111 kb on - strandat 864.155 kb on - strand, within Rru_A0738at 864.199 kb on + strand, within Rru_A0738at 864.441 kb on + strandat 864.548 kb on + strand, within Rru_A0739at 864.548 kb on + strand, within Rru_A0739at 864.548 kb on + strand, within Rru_A0739at 864.549 kb on - strand, within Rru_A0739at 864.552 kb on - strand, within Rru_A0739at 864.552 kb on - strand, within Rru_A0739at 864.626 kb on + strand, within Rru_A0739at 864.626 kb on + strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.774 kb on + strand, within Rru_A0739at 864.774 kb on + strand, within Rru_A0739at 864.774 kb on + strand, within Rru_A0739at 864.775 kb on - strand, within Rru_A0739at 864.775 kb on - strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.859 kb on - strand, within Rru_A0739at 864.912 kb on + strand, within Rru_A0739at 864.913 kb on - strand, within Rru_A0739at 865.002 kb on + strand, within Rru_A0739at 865.002 kb on + strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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863,229 + -1.5
863,230 - -1.9
863,230 - -0.0
863,230 - -0.0
863,232 - -1.9
863,232 - -0.0
863,232 - -0.0
863,232 - -0.0
863,548 + Rru_A0737 0.35 -1.9
863,549 - Rru_A0737 0.35 -0.0
863,716 + Rru_A0737 0.58 -3.9
863,717 - Rru_A0737 0.58 -0.0
863,717 - Rru_A0737 0.58 -1.8
863,718 + Rru_A0737 0.58 -3.9
863,718 + Rru_A0737 0.58 -0.0
863,719 - Rru_A0737 0.58 -3.4
863,719 - Rru_A0737 0.58 -0.0
864,064 + -0.0
864,065 - -1.7
864,065 - -0.0
864,065 - -1.0
864,065 - -0.0
864,067 - -1.9
864,068 + -0.0
864,068 + -0.0
864,069 - -0.0
864,069 - -1.6
864,069 - +1.6
864,069 - -1.9
864,110 + -1.0
864,111 - -0.0
864,155 - Rru_A0738 0.15 -0.0
864,199 + Rru_A0738 0.31 -0.0
864,441 + -0.0
864,548 + Rru_A0739 0.20 -3.8
864,548 + Rru_A0739 0.20 -0.0
864,548 + Rru_A0739 0.20 -0.0
864,549 - Rru_A0739 0.20 -0.0
864,552 - Rru_A0739 0.21 -2.1
864,552 - Rru_A0739 0.21 -0.0
864,626 + Rru_A0739 0.30 -0.0
864,626 + Rru_A0739 0.30 -0.0
864,627 - Rru_A0739 0.30 -0.0
864,627 - Rru_A0739 0.30 -0.0
864,627 - Rru_A0739 0.30 -0.0
864,627 - Rru_A0739 0.30 -0.0
864,690 + Rru_A0739 0.37 -0.0
864,690 + Rru_A0739 0.37 -0.0
864,690 + Rru_A0739 0.37 -0.0
864,690 + Rru_A0739 0.37 -0.0
864,691 - Rru_A0739 0.37 -0.0
864,691 - Rru_A0739 0.37 -0.0
864,691 - Rru_A0739 0.37 -0.0
864,691 - Rru_A0739 0.37 -0.0
864,691 - Rru_A0739 0.37 -0.0
864,691 - Rru_A0739 0.37 -1.8
864,691 - Rru_A0739 0.37 -0.0
864,691 - Rru_A0739 0.37 -2.1
864,774 + Rru_A0739 0.47 -2.9
864,774 + Rru_A0739 0.47 -0.0
864,774 + Rru_A0739 0.47 -1.7
864,775 - Rru_A0739 0.47 -0.0
864,775 - Rru_A0739 0.47 -0.0
864,776 + Rru_A0739 0.47 -0.0
864,776 + Rru_A0739 0.47 -0.0
864,776 + Rru_A0739 0.47 -1.6
864,776 + Rru_A0739 0.47 -0.0
864,859 - Rru_A0739 0.57 -4.1
864,912 + Rru_A0739 0.64 -0.0
864,913 - Rru_A0739 0.64 -1.3
865,002 + Rru_A0739 0.74 -0.0
865,002 + Rru_A0739 0.74 -0.0
865,003 - Rru_A0739 0.74 -0.0
865,003 - Rru_A0739 0.74 -0.0
865,003 - Rru_A0739 0.74 -2.2
865,003 - Rru_A0739 0.74 -1.0
865,003 - Rru_A0739 0.74 -3.3

Or see this region's nucleotide sequence