Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0730 and Rru_A0731 are separated by 166 nucleotides Rru_A0731 and Rru_A0732 are separated by 87 nucleotides Rru_A0732 and Rru_A0733 overlap by 4 nucleotides Rru_A0733 and Rru_A0734 are separated by 114 nucleotides
Rru_A0730: Rru_A0730 - hypothetical protein (NCBI), at 857,616 to 858,434
_A0730
Rru_A0731: Rru_A0731 - hypothetical protein (NCBI), at 858,601 to 859,302
_A0731
Rru_A0732: Rru_A0732 - DNA repair protein RadC (NCBI), at 859,390 to 860,121
_A0732
Rru_A0733: Rru_A0733 - Peptidase M24A, methionine aminopeptidase, subfamily 1 (NCBI), at 860,118 to 860,933
_A0733
Rru_A0734: Rru_A0734 - hypothetical protein (NCBI), at 861,048 to 861,503
_A0734
Position (kb) 859
860
861 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 858.601 kb on - strand at 858.659 kb on + strand at 858.659 kb on + strand at 858.660 kb on - strand at 859.300 kb on + strand at 859.300 kb on + strand at 859.300 kb on + strand at 859.301 kb on - strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.334 kb on - strand at 859.373 kb on - strand at 859.392 kb on - strand at 859.392 kb on - strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.555 kb on + strand, within Rru_A0732 at 859.555 kb on + strand, within Rru_A0732 at 859.556 kb on - strand, within Rru_A0732 at 859.556 kb on - strand, within Rru_A0732 at 859.557 kb on + strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.731 kb on - strand, within Rru_A0732 at 859.969 kb on + strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 860.048 kb on + strand at 860.048 kb on + strand at 860.049 kb on - strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 861.033 kb on + strand at 861.034 kb on - strand at 861.108 kb on + strand, within Rru_A0734
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 858,601 - -2.3 858,659 + -0.0 858,659 + -0.0 858,660 - -0.0 859,300 + -0.0 859,300 + -0.0 859,300 + -0.0 859,301 - -1.0 859,333 + -0.0 859,333 + -0.0 859,333 + -1.3 859,333 + -0.0 859,333 + -2.0 859,334 - -2.8 859,373 - -0.0 859,392 - -0.0 859,392 - -1.7 859,443 + -0.0 859,443 + -0.0 859,443 + -0.0 859,443 + -0.0 859,444 - -0.0 859,444 - -0.0 859,444 - -2.3 859,444 - -0.0 859,444 - -0.0 859,444 - -2.3 859,555 + Rru_A0732 0.23 -0.0 859,555 + Rru_A0732 0.23 -0.0 859,556 - Rru_A0732 0.23 -0.0 859,556 - Rru_A0732 0.23 -0.0 859,557 + Rru_A0732 0.23 -1.5 859,558 - Rru_A0732 0.23 -0.0 859,558 - Rru_A0732 0.23 -2.5 859,558 - Rru_A0732 0.23 -0.0 859,731 - Rru_A0732 0.47 -0.0 859,969 + Rru_A0732 0.79 -0.0 859,970 - Rru_A0732 0.79 -0.0 859,970 - Rru_A0732 0.79 -4.0 859,970 - Rru_A0732 0.79 -0.0 859,970 - Rru_A0732 0.79 -0.0 860,048 + -0.0 860,048 + -1.1 860,049 - -0.0 860,975 + -0.0 860,975 + -2.2 860,975 + -2.5 860,975 + -0.0 860,975 + -1.5 860,975 + -2.0 860,975 + -0.0 860,975 + -0.0 860,975 + -0.0 860,977 + -0.0 860,977 + -0.0 860,977 + -0.0 860,977 + -0.0 860,977 + -0.0 860,977 + -2.6 860,978 - -0.0 860,978 - -0.0 860,978 - -0.0 860,978 - -2.1 860,978 - -0.0 860,978 - -0.0 861,033 + -2.0 861,034 - -1.8 861,108 + Rru_A0734 0.13 -0.0
Or see this region's nucleotide sequence