Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0575 and Rru_A0576 are separated by 111 nucleotides Rru_A0576 and Rru_A0577 are separated by 23 nucleotides
Rru_A0575: Rru_A0575 - Peptidase U62, modulator of DNA gyrase (NCBI), at 682,439 to 683,797
_A0575
Rru_A0576: Rru_A0576 - chemotaxis sensory transducer (NCBI), at 683,909 to 685,975
_A0576
Rru_A0577: Rru_A0577 - hypothetical protein (NCBI), at 685,999 to 686,970
_A0577
Position (kb) 683
684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 682.962 kb on - strand, within Rru_A0575 at 683.034 kb on - strand, within Rru_A0575 at 683.034 kb on - strand, within Rru_A0575 at 683.561 kb on + strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.609 kb on + strand, within Rru_A0575 at 683.833 kb on - strand at 683.833 kb on - strand at 683.866 kb on + strand at 684.306 kb on - strand, within Rru_A0576 at 684.384 kb on - strand, within Rru_A0576 at 684.428 kb on + strand, within Rru_A0576 at 684.428 kb on + strand, within Rru_A0576 at 684.429 kb on - strand, within Rru_A0576 at 685.825 kb on - strand at 685.825 kb on - strand at 686.001 kb on - strand at 686.064 kb on + strand at 686.064 kb on + strand at 686.065 kb on - strand at 686.076 kb on + strand at 686.193 kb on - strand, within Rru_A0577 at 686.409 kb on + strand, within Rru_A0577 at 686.420 kb on + strand, within Rru_A0577 at 686.420 kb on + strand, within Rru_A0577 at 686.420 kb on + strand, within Rru_A0577 at 686.420 kb on + strand, within Rru_A0577 at 686.421 kb on - strand, within Rru_A0577 at 686.561 kb on + strand, within Rru_A0577 at 686.561 kb on + strand, within Rru_A0577 at 686.561 kb on + strand, within Rru_A0577 at 686.562 kb on - strand, within Rru_A0577 at 686.562 kb on - strand, within Rru_A0577 at 686.562 kb on - strand, within Rru_A0577 at 686.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 682,962 - Rru_A0575 0.38 -1.8 683,034 - Rru_A0575 0.44 +0.0 683,034 - Rru_A0575 0.44 -2.3 683,561 + Rru_A0575 0.83 -2.9 683,562 - Rru_A0575 0.83 +0.0 683,562 - Rru_A0575 0.83 -2.7 683,562 - Rru_A0575 0.83 +0.0 683,562 - Rru_A0575 0.83 -2.2 683,562 - Rru_A0575 0.83 -2.4 683,562 - Rru_A0575 0.83 +0.0 683,562 - Rru_A0575 0.83 +0.0 683,562 - Rru_A0575 0.83 -2.5 683,562 - Rru_A0575 0.83 +0.0 683,562 - Rru_A0575 0.83 +0.0 683,609 + Rru_A0575 0.86 -2.5 683,833 - +0.0 683,833 - +0.0 683,866 + -2.6 684,306 - Rru_A0576 0.19 +0.0 684,384 - Rru_A0576 0.23 +0.0 684,428 + Rru_A0576 0.25 +0.0 684,428 + Rru_A0576 0.25 +0.0 684,429 - Rru_A0576 0.25 +0.0 685,825 - +0.0 685,825 - +0.0 686,001 - +0.0 686,064 + +0.0 686,064 + -2.5 686,065 - -3.4 686,076 + -3.2 686,193 - Rru_A0577 0.20 +0.0 686,409 + Rru_A0577 0.42 +0.0 686,420 + Rru_A0577 0.43 +0.0 686,420 + Rru_A0577 0.43 +0.0 686,420 + Rru_A0577 0.43 +0.0 686,420 + Rru_A0577 0.43 -2.0 686,421 - Rru_A0577 0.43 +0.0 686,561 + Rru_A0577 0.58 -2.1 686,561 + Rru_A0577 0.58 +0.0 686,561 + Rru_A0577 0.58 +0.0 686,562 - Rru_A0577 0.58 +0.0 686,562 - Rru_A0577 0.58 +0.0 686,562 - Rru_A0577 0.58 +0.0 686,905 - -2.1
Or see this region's nucleotide sequence