Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0521

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0520 and Rru_A0521 are separated by 280 nucleotidesRru_A0521 and Rru_A0522 are separated by 179 nucleotidesRru_A0522 and Rru_A0523 are separated by 31 nucleotides Rru_A0520: Rru_A0520 - hypothetical protein (NCBI), at 613,309 to 613,983 _A0520 Rru_A0521: Rru_A0521 - CheA Signal Transduction Histidine Kinases (STHK) (NCBI), at 614,264 to 617,092 _A0521 Rru_A0522: Rru_A0522 - Response regulator receiver domain protein (CheY) (NCBI), at 617,272 to 617,643 _A0522 Rru_A0523: Rru_A0523 - Two component CheB methylesterase (NCBI), at 617,675 to 618,838 _A0523 Position (kb) 614 615 616 617 618Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.424 kb on + strand, within Rru_A0520at 613.424 kb on + strand, within Rru_A0520at 614.027 kb on + strandat 614.027 kb on + strandat 614.033 kb on - strandat 614.033 kb on - strandat 614.071 kb on + strandat 614.071 kb on + strandat 614.072 kb on - strandat 614.191 kb on + strandat 614.192 kb on - strandat 614.263 kb on + strandat 614.263 kb on + strandat 614.263 kb on + strandat 614.263 kb on + strandat 614.263 kb on + strandat 614.263 kb on + strandat 614.264 kb on - strandat 614.264 kb on - strandat 614.469 kb on + strandat 615.093 kb on + strand, within Rru_A0521at 615.275 kb on + strand, within Rru_A0521at 615.276 kb on - strand, within Rru_A0521at 615.276 kb on - strand, within Rru_A0521at 615.276 kb on - strand, within Rru_A0521at 615.276 kb on - strand, within Rru_A0521at 615.276 kb on - strand, within Rru_A0521at 615.432 kb on - strand, within Rru_A0521at 615.550 kb on + strand, within Rru_A0521at 615.551 kb on - strand, within Rru_A0521at 615.551 kb on - strand, within Rru_A0521at 615.551 kb on - strand, within Rru_A0521at 615.575 kb on + strand, within Rru_A0521at 615.575 kb on + strand, within Rru_A0521at 615.575 kb on + strand, within Rru_A0521at 615.576 kb on - strand, within Rru_A0521at 615.576 kb on - strand, within Rru_A0521at 616.028 kb on + strand, within Rru_A0521at 616.028 kb on + strand, within Rru_A0521at 616.028 kb on + strand, within Rru_A0521at 616.028 kb on + strand, within Rru_A0521at 616.028 kb on + strand, within Rru_A0521at 616.029 kb on - strand, within Rru_A0521at 616.029 kb on - strand, within Rru_A0521at 616.030 kb on + strand, within Rru_A0521at 616.030 kb on + strand, within Rru_A0521at 616.030 kb on + strand, within Rru_A0521at 616.525 kb on + strand, within Rru_A0521at 616.526 kb on - strand, within Rru_A0521at 616.628 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.632 kb on - strand, within Rru_A0521at 616.632 kb on - strand, within Rru_A0521at 616.632 kb on - strand, within Rru_A0521at 616.632 kb on - strand, within Rru_A0521at 616.632 kb on - strand, within Rru_A0521at 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.210 kb on + strandat 617.210 kb on + strandat 617.211 kb on - strandat 617.267 kb on + strandat 617.267 kb on + strandat 617.268 kb on - strandat 617.268 kb on - strandat 617.434 kb on - strand, within Rru_A0522at 617.434 kb on - strand, within Rru_A0522at 617.529 kb on + strand, within Rru_A0522at 617.573 kb on - strand, within Rru_A0522at 617.573 kb on - strand, within Rru_A0522at 617.574 kb on + strand, within Rru_A0522at 617.574 kb on + strand, within Rru_A0522at 617.575 kb on - strand, within Rru_A0522at 617.575 kb on - strand, within Rru_A0522at 617.577 kb on + strand, within Rru_A0522at 617.577 kb on + strand, within Rru_A0522at 617.577 kb on + strand, within Rru_A0522at 617.578 kb on - strand, within Rru_A0522at 617.707 kb on + strandat 617.707 kb on + strandat 617.925 kb on + strand, within Rru_A0523at 617.925 kb on + strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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613,412 + Rru_A0520 0.15 +0.0
613,412 + Rru_A0520 0.15 -2.6
613,412 + Rru_A0520 0.15 +0.0
613,412 + Rru_A0520 0.15 +0.0
613,412 + Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 -2.3
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 -4.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 -1.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,416 + Rru_A0520 0.16 -2.4
613,416 + Rru_A0520 0.16 -1.0
613,416 + Rru_A0520 0.16 +0.0
613,416 + Rru_A0520 0.16 -2.1
613,416 + Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 -2.9
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 -3.0
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 -1.7
613,417 - Rru_A0520 0.16 +0.0
613,424 + Rru_A0520 0.17 +0.0
613,424 + Rru_A0520 0.17 -2.6
614,027 + +0.0
614,027 + +0.0
614,033 - +0.0
614,033 - -2.4
614,071 + +0.0
614,071 + +0.0
614,072 - -4.3
614,191 + -1.6
614,192 - +0.0
614,263 + -4.0
614,263 + +0.0
614,263 + +0.0
614,263 + +0.0
614,263 + +0.0
614,263 + +0.0
614,264 - +0.0
614,264 - +0.0
614,469 + +0.0
615,093 + Rru_A0521 0.29 +0.0
615,275 + Rru_A0521 0.36 +0.0
615,276 - Rru_A0521 0.36 +0.0
615,276 - Rru_A0521 0.36 -3.6
615,276 - Rru_A0521 0.36 +0.0
615,276 - Rru_A0521 0.36 +0.0
615,276 - Rru_A0521 0.36 +0.0
615,432 - Rru_A0521 0.41 -3.5
615,550 + Rru_A0521 0.45 +0.0
615,551 - Rru_A0521 0.45 +0.0
615,551 - Rru_A0521 0.45 -1.0
615,551 - Rru_A0521 0.45 +0.0
615,575 + Rru_A0521 0.46 +0.0
615,575 + Rru_A0521 0.46 +0.0
615,575 + Rru_A0521 0.46 +0.0
615,576 - Rru_A0521 0.46 +0.0
615,576 - Rru_A0521 0.46 +0.0
616,028 + Rru_A0521 0.62 +0.0
616,028 + Rru_A0521 0.62 -2.8
616,028 + Rru_A0521 0.62 +0.0
616,028 + Rru_A0521 0.62 -3.3
616,028 + Rru_A0521 0.62 +0.0
616,029 - Rru_A0521 0.62 +0.0
616,029 - Rru_A0521 0.62 -3.8
616,030 + Rru_A0521 0.62 -1.0
616,030 + Rru_A0521 0.62 -3.4
616,030 + Rru_A0521 0.62 +0.0
616,525 + Rru_A0521 0.80 +0.0
616,526 - Rru_A0521 0.80 +0.0
616,628 + Rru_A0521 0.84 +0.0
616,631 + Rru_A0521 0.84 -2.1
616,631 + Rru_A0521 0.84 +0.0
616,631 + Rru_A0521 0.84 +0.0
616,631 + Rru_A0521 0.84 +0.0
616,631 + Rru_A0521 0.84 +0.0
616,631 + Rru_A0521 0.84 +0.0
616,632 - Rru_A0521 0.84 +0.0
616,632 - Rru_A0521 0.84 +0.0
616,632 - Rru_A0521 0.84 -4.4
616,632 - Rru_A0521 0.84 +0.0
616,632 - Rru_A0521 0.84 -1.6
617,003 + +0.0
617,003 + +0.0
617,003 + +0.0
617,003 + +0.0
617,003 + -2.2
617,003 + +0.0
617,003 + +0.0
617,003 + +0.0
617,004 - +0.0
617,004 - +0.0
617,004 - +0.0
617,004 - +0.0
617,004 - -2.9
617,004 - -2.9
617,210 + -3.6
617,210 + -2.8
617,211 - +0.0
617,267 + +0.0
617,267 + -3.3
617,268 - +0.0
617,268 - -2.0
617,434 - Rru_A0522 0.44 +0.0
617,434 - Rru_A0522 0.44 +0.0
617,529 + Rru_A0522 0.69 +0.0
617,573 - Rru_A0522 0.81 -2.8
617,573 - Rru_A0522 0.81 +0.0
617,574 + Rru_A0522 0.81 -2.8
617,574 + Rru_A0522 0.81 +0.0
617,575 - Rru_A0522 0.81 +0.0
617,575 - Rru_A0522 0.81 -2.2
617,577 + Rru_A0522 0.82 +0.0
617,577 + Rru_A0522 0.82 -1.0
617,577 + Rru_A0522 0.82 +0.0
617,578 - Rru_A0522 0.82 +0.0
617,707 + -2.5
617,707 + +0.0
617,925 + Rru_A0523 0.21 +0.0
617,925 + Rru_A0523 0.21 +0.0
617,926 - Rru_A0523 0.22 +0.0
617,926 - Rru_A0523 0.22 +0.0
617,926 - Rru_A0523 0.22 +0.0

Or see this region's nucleotide sequence