Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0520

Experiment: L-Malic Acid (C) with ammonium chloride; no light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0518 and Rru_A0519 are separated by 47 nucleotidesRru_A0519 and Rru_A0520 are separated by 183 nucleotidesRru_A0520 and Rru_A0521 are separated by 280 nucleotides Rru_A0518: Rru_A0518 - molybdenum cofactor biosynthesis protein (NCBI), at 611,792 to 612,889 _A0518 Rru_A0519: Rru_A0519 - hypothetical protein (NCBI), at 612,937 to 613,125 _A0519 Rru_A0520: Rru_A0520 - hypothetical protein (NCBI), at 613,309 to 613,983 _A0520 Rru_A0521: Rru_A0521 - CheA Signal Transduction Histidine Kinases (STHK) (NCBI), at 614,264 to 617,092 _A0521 Position (kb) 613 614Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 612.415 kb on + strand, within Rru_A0518at 612.416 kb on - strand, within Rru_A0518at 612.416 kb on - strand, within Rru_A0518at 612.416 kb on - strand, within Rru_A0518at 612.717 kb on + strand, within Rru_A0518at 612.718 kb on - strand, within Rru_A0518at 612.718 kb on - strand, within Rru_A0518at 612.762 kb on + strand, within Rru_A0518at 612.762 kb on + strand, within Rru_A0518at 612.762 kb on + strand, within Rru_A0518at 612.762 kb on + strand, within Rru_A0518at 612.763 kb on - strand, within Rru_A0518at 612.915 kb on + strandat 612.915 kb on + strandat 612.916 kb on - strandat 612.916 kb on - strandat 613.140 kb on - strandat 613.203 kb on - strandat 613.208 kb on + strandat 613.208 kb on + strandat 613.208 kb on + strandat 613.209 kb on - strandat 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.424 kb on + strand, within Rru_A0520at 613.424 kb on + strand, within Rru_A0520at 614.027 kb on + strandat 614.027 kb on + strandat 614.033 kb on - strandat 614.033 kb on - strandat 614.071 kb on + strandat 614.071 kb on + strandat 614.072 kb on - strandat 614.191 kb on + strandat 614.192 kb on - strandat 614.263 kb on + strandat 614.263 kb on + strandat 614.263 kb on + strandat 614.263 kb on + strandat 614.263 kb on + strandat 614.263 kb on + strandat 614.264 kb on - strandat 614.264 kb on - strandat 614.469 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
remove
612,415 + Rru_A0518 0.57 +0.0
612,416 - Rru_A0518 0.57 +0.0
612,416 - Rru_A0518 0.57 +0.0
612,416 - Rru_A0518 0.57 +0.0
612,717 + Rru_A0518 0.84 -1.4
612,718 - Rru_A0518 0.84 +0.0
612,718 - Rru_A0518 0.84 -1.7
612,762 + Rru_A0518 0.88 +0.0
612,762 + Rru_A0518 0.88 +0.0
612,762 + Rru_A0518 0.88 +0.0
612,762 + Rru_A0518 0.88 -1.3
612,763 - Rru_A0518 0.88 -2.8
612,915 + +0.0
612,915 + -0.4
612,916 - -2.2
612,916 - -1.5
613,140 - +0.0
613,203 - +0.0
613,208 + +0.0
613,208 + -0.6
613,208 + +0.0
613,209 - +0.0
613,412 + Rru_A0520 0.15 +0.0
613,412 + Rru_A0520 0.15 -2.6
613,412 + Rru_A0520 0.15 +0.0
613,412 + Rru_A0520 0.15 +0.0
613,412 + Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 -2.3
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 -4.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 -1.0
613,413 - Rru_A0520 0.15 +0.0
613,413 - Rru_A0520 0.15 +0.0
613,416 + Rru_A0520 0.16 -2.4
613,416 + Rru_A0520 0.16 -1.0
613,416 + Rru_A0520 0.16 +0.0
613,416 + Rru_A0520 0.16 -2.1
613,416 + Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 -2.9
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 -3.0
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 -1.7
613,417 - Rru_A0520 0.16 +0.0
613,424 + Rru_A0520 0.17 +0.0
613,424 + Rru_A0520 0.17 -2.6
614,027 + +0.0
614,027 + +0.0
614,033 - +0.0
614,033 - -2.4
614,071 + +0.0
614,071 + +0.0
614,072 - -4.3
614,191 + -1.6
614,192 - +0.0
614,263 + -4.0
614,263 + +0.0
614,263 + +0.0
614,263 + +0.0
614,263 + +0.0
614,263 + +0.0
614,264 - +0.0
614,264 - +0.0
614,469 + +0.0

Or see this region's nucleotide sequence