Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0509

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0508 and Rru_A0509 are separated by 264 nucleotidesRru_A0509 and Rru_A0510 are separated by 10 nucleotidesRru_A0510 and Rru_A0511 are separated by 12 nucleotides Rru_A0508: Rru_A0508 - Aminotransferase, class IV (NCBI), at 602,172 to 603,056 _A0508 Rru_A0509: Rru_A0509 - hypothetical protein (NCBI), at 603,321 to 603,644 _A0509 Rru_A0510: Rru_A0510 - hypothetical protein (NCBI), at 603,655 to 603,951 _A0510 Rru_A0511: Rru_A0511 - DEAD/DEAH box helicase (NCBI), at 603,964 to 606,573 _A0511 Position (kb) 603 604Strain fitness (log2 ratio) -3 -2 -1 0 1at 602.468 kb on + strand, within Rru_A0508at 602.468 kb on + strand, within Rru_A0508at 602.471 kb on - strand, within Rru_A0508at 602.471 kb on - strand, within Rru_A0508at 602.628 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.732 kb on - strand, within Rru_A0508at 602.732 kb on - strand, within Rru_A0508at 602.749 kb on + strand, within Rru_A0508at 602.749 kb on + strand, within Rru_A0508at 602.750 kb on - strand, within Rru_A0508at 602.771 kb on - strand, within Rru_A0508at 602.915 kb on - strand, within Rru_A0508at 602.915 kb on - strand, within Rru_A0508at 602.949 kb on + strand, within Rru_A0508at 602.949 kb on + strand, within Rru_A0508at 602.950 kb on - strand, within Rru_A0508at 602.950 kb on - strand, within Rru_A0508at 603.010 kb on + strandat 603.010 kb on + strandat 603.011 kb on - strandat 603.012 kb on + strandat 603.013 kb on - strandat 603.013 kb on - strandat 603.131 kb on - strandat 603.245 kb on + strandat 603.245 kb on + strandat 603.246 kb on - strandat 603.249 kb on - strandat 603.249 kb on - strandat 603.254 kb on + strandat 603.254 kb on + strandat 603.279 kb on + strandat 603.279 kb on + strandat 603.279 kb on + strandat 603.280 kb on - strandat 603.320 kb on + strandat 603.321 kb on - strandat 603.321 kb on - strandat 603.510 kb on + strand, within Rru_A0509at 603.542 kb on + strand, within Rru_A0509at 603.543 kb on - strand, within Rru_A0509at 603.572 kb on + strand, within Rru_A0509at 603.573 kb on - strand, within Rru_A0509at 603.643 kb on - strandat 603.657 kb on - strandat 603.657 kb on - strandat 603.657 kb on - strandat 603.761 kb on + strand, within Rru_A0510at 603.761 kb on + strand, within Rru_A0510at 603.761 kb on + strand, within Rru_A0510at 603.761 kb on + strand, within Rru_A0510at 603.762 kb on - strand, within Rru_A0510at 603.863 kb on + strand, within Rru_A0510at 603.863 kb on + strand, within Rru_A0510at 603.864 kb on - strand, within Rru_A0510at 603.864 kb on - strand, within Rru_A0510at 603.887 kb on + strand, within Rru_A0510at 603.888 kb on - strand, within Rru_A0510at 603.888 kb on - strand, within Rru_A0510at 603.951 kb on + strandat 603.979 kb on + strandat 604.046 kb on - strandat 604.046 kb on - strandat 604.060 kb on + strandat 604.108 kb on + strandat 604.108 kb on + strandat 604.109 kb on - strandat 604.109 kb on - strandat 604.133 kb on + strandat 604.134 kb on - strandat 604.184 kb on - strandat 604.275 kb on + strand, within Rru_A0511at 604.276 kb on - strand, within Rru_A0511at 604.276 kb on - strand, within Rru_A0511at 604.276 kb on - strand, within Rru_A0511at 604.276 kb on - strand, within Rru_A0511at 604.276 kb on - strand, within Rru_A0511at 604.278 kb on - strand, within Rru_A0511at 604.290 kb on + strand, within Rru_A0511at 604.291 kb on - strand, within Rru_A0511at 604.291 kb on - strand, within Rru_A0511at 604.302 kb on + strand, within Rru_A0511at 604.303 kb on - strand, within Rru_A0511at 604.303 kb on - strand, within Rru_A0511at 604.305 kb on - strand, within Rru_A0511at 604.305 kb on - strand, within Rru_A0511at 604.351 kb on - strand, within Rru_A0511at 604.469 kb on + strand, within Rru_A0511at 604.555 kb on - strand, within Rru_A0511at 604.567 kb on + strand, within Rru_A0511at 604.604 kb on + strand, within Rru_A0511at 604.605 kb on - strand, within Rru_A0511at 604.633 kb on + strand, within Rru_A0511at 604.634 kb on - strand, within Rru_A0511

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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602,468 + Rru_A0508 0.33 -1.0
602,468 + Rru_A0508 0.33 +0.0
602,471 - Rru_A0508 0.34 -1.9
602,471 - Rru_A0508 0.34 -2.3
602,628 + Rru_A0508 0.52 +0.0
602,731 + Rru_A0508 0.63 -2.1
602,731 + Rru_A0508 0.63 +0.0
602,731 + Rru_A0508 0.63 +0.0
602,732 - Rru_A0508 0.63 +0.0
602,732 - Rru_A0508 0.63 +0.0
602,749 + Rru_A0508 0.65 +0.0
602,749 + Rru_A0508 0.65 -2.2
602,750 - Rru_A0508 0.65 -1.6
602,771 - Rru_A0508 0.68 +0.0
602,915 - Rru_A0508 0.84 +0.0
602,915 - Rru_A0508 0.84 +0.0
602,949 + Rru_A0508 0.88 +0.0
602,949 + Rru_A0508 0.88 +0.0
602,950 - Rru_A0508 0.88 +0.0
602,950 - Rru_A0508 0.88 +0.0
603,010 + +0.0
603,010 + +0.0
603,011 - -2.3
603,012 + +0.0
603,013 - -2.1
603,013 - +0.0
603,131 - +0.0
603,245 + +0.0
603,245 + +0.0
603,246 - -2.4
603,249 - -2.5
603,249 - -2.3
603,254 + +0.0
603,254 + +0.0
603,279 + +0.0
603,279 + -2.0
603,279 + -1.0
603,280 - -2.9
603,320 + +0.0
603,321 - +0.0
603,321 - +0.0
603,510 + Rru_A0509 0.58 +0.0
603,542 + Rru_A0509 0.68 +0.0
603,543 - Rru_A0509 0.69 +0.0
603,572 + Rru_A0509 0.77 +0.0
603,573 - Rru_A0509 0.78 +0.0
603,643 - +0.0
603,657 - +0.0
603,657 - -1.9
603,657 - -2.2
603,761 + Rru_A0510 0.36 +0.0
603,761 + Rru_A0510 0.36 -2.6
603,761 + Rru_A0510 0.36 +0.0
603,761 + Rru_A0510 0.36 +0.0
603,762 - Rru_A0510 0.36 +0.0
603,863 + Rru_A0510 0.70 -1.5
603,863 + Rru_A0510 0.70 -1.5
603,864 - Rru_A0510 0.70 +0.0
603,864 - Rru_A0510 0.70 +0.0
603,887 + Rru_A0510 0.78 +0.0
603,888 - Rru_A0510 0.78 -1.9
603,888 - Rru_A0510 0.78 +0.0
603,951 + +0.0
603,979 + +0.0
604,046 - +0.0
604,046 - +0.0
604,060 + -2.3
604,108 + +0.0
604,108 + +0.0
604,109 - -2.2
604,109 - +0.0
604,133 + +0.0
604,134 - +0.0
604,184 - +0.0
604,275 + Rru_A0511 0.12 +0.0
604,276 - Rru_A0511 0.12 -2.6
604,276 - Rru_A0511 0.12 +0.0
604,276 - Rru_A0511 0.12 +0.0
604,276 - Rru_A0511 0.12 +0.0
604,276 - Rru_A0511 0.12 +0.0
604,278 - Rru_A0511 0.12 -2.0
604,290 + Rru_A0511 0.12 +0.0
604,291 - Rru_A0511 0.13 -2.0
604,291 - Rru_A0511 0.13 +0.0
604,302 + Rru_A0511 0.13 -2.5
604,303 - Rru_A0511 0.13 -3.2
604,303 - Rru_A0511 0.13 +0.0
604,305 - Rru_A0511 0.13 +0.0
604,305 - Rru_A0511 0.13 +0.0
604,351 - Rru_A0511 0.15 -2.1
604,469 + Rru_A0511 0.19 +0.0
604,555 - Rru_A0511 0.23 +0.0
604,567 + Rru_A0511 0.23 +0.0
604,604 + Rru_A0511 0.25 +0.0
604,605 - Rru_A0511 0.25 +0.0
604,633 + Rru_A0511 0.26 +0.0
604,634 - Rru_A0511 0.26 +0.0

Or see this region's nucleotide sequence