Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0500 and Rru_A0501 are separated by 547 nucleotides Rru_A0501 and Rru_A0502 are separated by 345 nucleotides
Rru_A0500: Rru_A0500 - extracellular solute-binding protein, family 1 (NCBI), at 585,194 to 586,297
_A0500
Rru_A0501: Rru_A0501 - no description, at 586,845 to 586,994
_A0501
Rru_A0502: Rru_A0502 - hypothetical protein (NCBI), at 587,340 to 591,317
_A0502
Position (kb) 586
587 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 585.873 kb on + strand, within Rru_A0500 at 585.873 kb on + strand, within Rru_A0500 at 585.873 kb on + strand, within Rru_A0500 at 585.876 kb on + strand, within Rru_A0500 at 585.876 kb on + strand, within Rru_A0500 at 585.877 kb on - strand, within Rru_A0500 at 585.877 kb on - strand, within Rru_A0500 at 585.944 kb on - strand, within Rru_A0500 at 586.028 kb on - strand, within Rru_A0500 at 586.100 kb on - strand, within Rru_A0500 at 586.100 kb on - strand, within Rru_A0500 at 586.107 kb on + strand, within Rru_A0500 at 586.107 kb on + strand, within Rru_A0500 at 586.108 kb on - strand, within Rru_A0500 at 586.108 kb on - strand, within Rru_A0500 at 586.284 kb on + strand at 586.285 kb on - strand at 586.324 kb on - strand at 586.324 kb on - strand at 586.324 kb on - strand at 586.363 kb on + strand at 586.364 kb on - strand at 586.379 kb on - strand at 586.534 kb on - strand at 586.592 kb on + strand at 586.632 kb on - strand at 586.632 kb on - strand at 586.632 kb on - strand at 586.700 kb on + strand at 586.700 kb on + strand at 586.701 kb on - strand at 586.701 kb on - strand at 586.752 kb on + strand at 586.753 kb on - strand at 586.789 kb on + strand at 586.958 kb on + strand, within Rru_A0501 at 587.082 kb on + strand at 587.082 kb on + strand at 587.082 kb on + strand at 587.083 kb on - strand at 587.083 kb on - strand at 587.146 kb on + strand at 587.315 kb on - strand at 587.318 kb on + strand at 587.319 kb on - strand at 587.369 kb on + strand at 587.369 kb on + strand at 587.369 kb on + strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.461 kb on + strand at 587.461 kb on + strand at 587.464 kb on + strand at 587.465 kb on - strand at 587.548 kb on - strand at 587.881 kb on + strand, within Rru_A0502 at 587.881 kb on + strand, within Rru_A0502 at 587.881 kb on + strand, within Rru_A0502 at 587.881 kb on + strand, within Rru_A0502 at 587.881 kb on + strand, within Rru_A0502 at 587.882 kb on - strand, within Rru_A0502 at 587.949 kb on + strand, within Rru_A0502 at 587.950 kb on - strand, within Rru_A0502 at 587.950 kb on - strand, within Rru_A0502 at 587.950 kb on - strand, within Rru_A0502
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 585,873 + Rru_A0500 0.62 +0.0 585,873 + Rru_A0500 0.62 +0.0 585,873 + Rru_A0500 0.62 +0.0 585,876 + Rru_A0500 0.62 +0.0 585,876 + Rru_A0500 0.62 +0.0 585,877 - Rru_A0500 0.62 +0.0 585,877 - Rru_A0500 0.62 +0.0 585,944 - Rru_A0500 0.68 +0.0 586,028 - Rru_A0500 0.76 +0.0 586,100 - Rru_A0500 0.82 +0.0 586,100 - Rru_A0500 0.82 +0.0 586,107 + Rru_A0500 0.83 +0.0 586,107 + Rru_A0500 0.83 -1.4 586,108 - Rru_A0500 0.83 +0.0 586,108 - Rru_A0500 0.83 +0.0 586,284 + +0.0 586,285 - -2.8 586,324 - -2.7 586,324 - +0.0 586,324 - +0.0 586,363 + +0.0 586,364 - -1.6 586,379 - +0.0 586,534 - +0.0 586,592 + +0.0 586,632 - +0.0 586,632 - +0.0 586,632 - -1.8 586,700 + -2.2 586,700 + +0.0 586,701 - +0.0 586,701 - +0.0 586,752 + +0.0 586,753 - +0.0 586,789 + -3.0 586,958 + Rru_A0501 0.75 +0.0 587,082 + +0.0 587,082 + -2.0 587,082 + +0.0 587,083 - +0.0 587,083 - +0.0 587,146 + +0.0 587,315 - +0.0 587,318 + -2.3 587,319 - +0.0 587,369 + -1.9 587,369 + -1.8 587,369 + +0.0 587,370 - -5.7 587,370 - +0.0 587,370 - +0.0 587,370 - +0.0 587,461 + +0.0 587,461 + +0.0 587,464 + -2.2 587,465 - +0.0 587,548 - +1.0 587,881 + Rru_A0502 0.14 +0.0 587,881 + Rru_A0502 0.14 -2.5 587,881 + Rru_A0502 0.14 +0.0 587,881 + Rru_A0502 0.14 +0.0 587,881 + Rru_A0502 0.14 +0.0 587,882 - Rru_A0502 0.14 +0.0 587,949 + Rru_A0502 0.15 -2.2 587,950 - Rru_A0502 0.15 +0.0 587,950 - Rru_A0502 0.15 +0.0 587,950 - Rru_A0502 0.15 -1.6
Or see this region's nucleotide sequence