Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0415

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0413 and Rru_A0414 overlap by 4 nucleotidesRru_A0414 and Rru_A0415 are separated by 294 nucleotidesRru_A0415 and Rru_A0416 are separated by 107 nucleotides Rru_A0413: Rru_A0413 - Ribosomal protein S18 (NCBI), at 490,521 to 490,757 _A0413 Rru_A0414: Rru_A0414 - Ribosomal protein S6 (NCBI), at 490,754 to 491,236 _A0414 Rru_A0415: Rru_A0415 - Malonyl CoA-acyl carrier protein transacylase (NCBI), at 491,531 to 492,469 _A0415 Rru_A0416: Rru_A0416 - 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI), at 492,577 to 493,314 _A0416 Position (kb) 491 492 493Strain fitness (log2 ratio) -3 -2 -1 0 1at 491.353 kb on - strandat 491.353 kb on - strandat 492.467 kb on + strandat 492.468 kb on - strandat 492.468 kb on - strandat 492.468 kb on - strandat 492.468 kb on - strandat 492.468 kb on - strandat 492.468 kb on - strandat 492.515 kb on + strandat 492.522 kb on - strandat 492.522 kb on - strandat 493.405 kb on + strandat 493.405 kb on + strandat 493.405 kb on + strandat 493.405 kb on + strandat 493.410 kb on + strandat 493.410 kb on + strandat 493.410 kb on + strandat 493.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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491,353 - +0.0
491,353 - +0.0
492,467 + +0.0
492,468 - +0.0
492,468 - +0.0
492,468 - -3.1
492,468 - -1.2
492,468 - +0.0
492,468 - +0.0
492,515 + +0.0
492,522 - +0.0
492,522 - +0.0
493,405 + -2.6
493,405 + +0.0
493,405 + +0.0
493,405 + +0.0
493,410 + +0.0
493,410 + +0.0
493,410 + -3.0
493,426 + -1.2

Or see this region's nucleotide sequence