Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0339 and Rru_A0340 are separated by 787 nucleotides Rru_A0340 and Rru_A0341 are separated by 259 nucleotides
Rru_A0339: Rru_A0339 - Short-chain dehydrogenase/reductase SDR (NCBI), at 409,696 to 410,487
_A0339
Rru_A0340: Rru_A0340 - CRISPR-associated helicase Cas3, core (NCBI), at 411,275 to 413,932
_A0340
Rru_A0341: Rru_A0341 - hypothetical protein (NCBI), at 414,192 to 415,475
_A0341
Position (kb) 411
412
413
414 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 410.317 kb on + strand, within Rru_A0339 at 410.500 kb on + strand at 410.501 kb on - strand at 410.501 kb on - strand at 410.687 kb on + strand at 410.688 kb on - strand at 410.901 kb on + strand at 410.901 kb on + strand at 410.902 kb on - strand at 410.902 kb on - strand at 410.978 kb on - strand at 411.356 kb on + strand at 411.357 kb on - strand at 411.549 kb on + strand, within Rru_A0340 at 411.549 kb on + strand, within Rru_A0340 at 411.597 kb on + strand, within Rru_A0340 at 411.622 kb on + strand, within Rru_A0340 at 411.622 kb on + strand, within Rru_A0340 at 411.622 kb on + strand, within Rru_A0340 at 411.622 kb on + strand, within Rru_A0340 at 411.622 kb on + strand, within Rru_A0340 at 411.622 kb on + strand, within Rru_A0340 at 411.623 kb on - strand, within Rru_A0340 at 411.623 kb on - strand, within Rru_A0340 at 411.623 kb on - strand, within Rru_A0340 at 411.623 kb on - strand, within Rru_A0340 at 411.623 kb on - strand, within Rru_A0340 at 411.623 kb on - strand, within Rru_A0340 at 411.623 kb on - strand, within Rru_A0340 at 412.007 kb on + strand, within Rru_A0340 at 412.007 kb on + strand, within Rru_A0340 at 412.007 kb on + strand, within Rru_A0340 at 412.008 kb on - strand, within Rru_A0340 at 412.008 kb on - strand, within Rru_A0340 at 412.008 kb on - strand, within Rru_A0340 at 412.008 kb on - strand, within Rru_A0340 at 412.008 kb on - strand, within Rru_A0340 at 412.122 kb on + strand, within Rru_A0340 at 412.122 kb on + strand, within Rru_A0340 at 412.123 kb on - strand, within Rru_A0340 at 412.123 kb on - strand, within Rru_A0340 at 412.123 kb on - strand, within Rru_A0340 at 412.123 kb on - strand, within Rru_A0340 at 412.123 kb on - strand, within Rru_A0340 at 412.123 kb on - strand, within Rru_A0340 at 412.123 kb on - strand, within Rru_A0340 at 412.274 kb on + strand, within Rru_A0340 at 412.275 kb on - strand, within Rru_A0340 at 412.389 kb on - strand, within Rru_A0340 at 412.617 kb on + strand, within Rru_A0340 at 412.802 kb on + strand, within Rru_A0340 at 413.346 kb on + strand, within Rru_A0340 at 413.346 kb on + strand, within Rru_A0340 at 413.346 kb on + strand, within Rru_A0340 at 413.347 kb on - strand, within Rru_A0340 at 413.414 kb on + strand, within Rru_A0340 at 413.570 kb on + strand, within Rru_A0340 at 413.570 kb on + strand, within Rru_A0340 at 413.571 kb on - strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.663 kb on + strand, within Rru_A0340 at 413.992 kb on + strand at 414.116 kb on + strand at 414.188 kb on + strand at 414.332 kb on + strand, within Rru_A0341 at 414.332 kb on + strand, within Rru_A0341 at 414.332 kb on + strand, within Rru_A0341 at 414.332 kb on + strand, within Rru_A0341
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 410,317 + Rru_A0339 0.78 -0.0 410,500 + -0.0 410,501 - -0.0 410,501 - -0.0 410,687 + -2.6 410,688 - -0.0 410,901 + -2.0 410,901 + -3.8 410,902 - -0.0 410,902 - -3.3 410,978 - -0.0 411,356 + -2.2 411,357 - -3.1 411,549 + Rru_A0340 0.10 -0.0 411,549 + Rru_A0340 0.10 -1.1 411,597 + Rru_A0340 0.12 -0.0 411,622 + Rru_A0340 0.13 -0.0 411,622 + Rru_A0340 0.13 -2.0 411,622 + Rru_A0340 0.13 -0.0 411,622 + Rru_A0340 0.13 -0.0 411,622 + Rru_A0340 0.13 -0.0 411,622 + Rru_A0340 0.13 -2.4 411,623 - Rru_A0340 0.13 -0.2 411,623 - Rru_A0340 0.13 -0.0 411,623 - Rru_A0340 0.13 -0.0 411,623 - Rru_A0340 0.13 -2.4 411,623 - Rru_A0340 0.13 -1.1 411,623 - Rru_A0340 0.13 -1.9 411,623 - Rru_A0340 0.13 -1.6 412,007 + Rru_A0340 0.28 -0.0 412,007 + Rru_A0340 0.28 -2.2 412,007 + Rru_A0340 0.28 -1.9 412,008 - Rru_A0340 0.28 -0.0 412,008 - Rru_A0340 0.28 -0.0 412,008 - Rru_A0340 0.28 -2.2 412,008 - Rru_A0340 0.28 -1.7 412,008 - Rru_A0340 0.28 -0.0 412,122 + Rru_A0340 0.32 -2.1 412,122 + Rru_A0340 0.32 -0.0 412,123 - Rru_A0340 0.32 -1.0 412,123 - Rru_A0340 0.32 -0.0 412,123 - Rru_A0340 0.32 -0.0 412,123 - Rru_A0340 0.32 -0.0 412,123 - Rru_A0340 0.32 -0.0 412,123 - Rru_A0340 0.32 -2.4 412,123 - Rru_A0340 0.32 -0.0 412,274 + Rru_A0340 0.38 -0.0 412,275 - Rru_A0340 0.38 -0.0 412,389 - Rru_A0340 0.42 -0.0 412,617 + Rru_A0340 0.50 -0.0 412,802 + Rru_A0340 0.57 -0.0 413,346 + Rru_A0340 0.78 -0.0 413,346 + Rru_A0340 0.78 -1.0 413,346 + Rru_A0340 0.78 -2.1 413,347 - Rru_A0340 0.78 -0.0 413,414 + Rru_A0340 0.80 -0.0 413,570 + Rru_A0340 0.86 -0.0 413,570 + Rru_A0340 0.86 -0.0 413,571 - Rru_A0340 0.86 -0.0 413,583 + Rru_A0340 0.87 -0.0 413,583 + Rru_A0340 0.87 -2.5 413,583 + Rru_A0340 0.87 -0.0 413,583 + Rru_A0340 0.87 -0.0 413,584 - Rru_A0340 0.87 -0.0 413,584 - Rru_A0340 0.87 -0.0 413,584 - Rru_A0340 0.87 -0.0 413,584 - Rru_A0340 0.87 -0.0 413,584 - Rru_A0340 0.87 -0.0 413,584 - Rru_A0340 0.87 -0.0 413,584 - Rru_A0340 0.87 -0.0 413,584 - Rru_A0340 0.87 -0.0 413,663 + Rru_A0340 0.90 -0.0 413,992 + -3.0 414,116 + -1.0 414,188 + -0.0 414,332 + Rru_A0341 0.11 -0.0 414,332 + Rru_A0341 0.11 -0.0 414,332 + Rru_A0341 0.11 -0.0 414,332 + Rru_A0341 0.11 -0.0
Or see this region's nucleotide sequence