Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0331 and Rru_A0332 are separated by 69 nucleotides Rru_A0332 and Rru_A0333 are separated by 158 nucleotides Rru_A0333 and Rru_A0334 are separated by 475 nucleotides
Rru_A0331: Rru_A0331 - Protein of unknown function DUF6, transmembrane (NCBI), at 403,118 to 404,086
_A0331
Rru_A0332: Rru_A0332 - Glutathione S-transferase-like (NCBI), at 404,156 to 404,845
_A0332
Rru_A0333: Rru_A0333 - Ferritin and Dps (NCBI), at 405,004 to 405,480
_A0333
Rru_A0334: Rru_A0334 - Transcriptional Regulator, LysR family (NCBI), at 405,956 to 406,918
_A0334
Position (kb) 405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 404.108 kb on + strand at 404.108 kb on + strand at 404.159 kb on + strand at 404.159 kb on + strand at 404.159 kb on + strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.169 kb on - strand at 404.169 kb on - strand at 404.169 kb on - strand at 404.172 kb on - strand at 404.231 kb on + strand, within Rru_A0332 at 404.231 kb on + strand, within Rru_A0332 at 404.231 kb on + strand, within Rru_A0332 at 404.232 kb on - strand, within Rru_A0332 at 404.232 kb on - strand, within Rru_A0332 at 404.232 kb on - strand, within Rru_A0332 at 404.233 kb on + strand, within Rru_A0332 at 404.387 kb on + strand, within Rru_A0332 at 404.388 kb on - strand, within Rru_A0332 at 404.516 kb on + strand, within Rru_A0332 at 404.537 kb on + strand, within Rru_A0332 at 404.552 kb on + strand, within Rru_A0332 at 404.612 kb on + strand, within Rru_A0332 at 404.628 kb on - strand, within Rru_A0332 at 404.797 kb on + strand at 404.797 kb on + strand at 405.019 kb on - strand at 405.019 kb on - strand at 405.222 kb on - strand, within Rru_A0333 at 405.230 kb on + strand, within Rru_A0333 at 405.248 kb on + strand, within Rru_A0333 at 405.305 kb on + strand, within Rru_A0333 at 405.305 kb on + strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.366 kb on - strand, within Rru_A0333 at 405.384 kb on - strand, within Rru_A0333 at 405.390 kb on + strand, within Rru_A0333 at 405.391 kb on - strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.608 kb on - strand at 405.609 kb on + strand at 405.879 kb on + strand at 405.879 kb on + strand at 405.880 kb on - strand at 405.936 kb on - strand at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.319 kb on + strand, within Rru_A0334 at 406.319 kb on + strand, within Rru_A0334 at 406.320 kb on - strand, within Rru_A0334
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 404,108 + -0.0 404,108 + -2.3 404,159 + -0.0 404,159 + -0.0 404,159 + -1.0 404,160 - -0.0 404,160 - -0.0 404,160 - -0.0 404,160 - -0.0 404,160 - -3.6 404,160 - -0.0 404,160 - -1.6 404,169 - -0.0 404,169 - -0.0 404,169 - -0.0 404,172 - -0.0 404,231 + Rru_A0332 0.11 -0.0 404,231 + Rru_A0332 0.11 -0.0 404,231 + Rru_A0332 0.11 -0.0 404,232 - Rru_A0332 0.11 -0.0 404,232 - Rru_A0332 0.11 -0.0 404,232 - Rru_A0332 0.11 -0.0 404,233 + Rru_A0332 0.11 -0.0 404,387 + Rru_A0332 0.33 -0.0 404,388 - Rru_A0332 0.34 -0.0 404,516 + Rru_A0332 0.52 -0.0 404,537 + Rru_A0332 0.55 -0.0 404,552 + Rru_A0332 0.57 -0.0 404,612 + Rru_A0332 0.66 -0.0 404,628 - Rru_A0332 0.68 -0.0 404,797 + -0.0 404,797 + -0.0 405,019 - -0.0 405,019 - -2.2 405,222 - Rru_A0333 0.46 -0.0 405,230 + Rru_A0333 0.47 -2.4 405,248 + Rru_A0333 0.51 -0.0 405,305 + Rru_A0333 0.63 -0.0 405,305 + Rru_A0333 0.63 -0.0 405,306 - Rru_A0333 0.63 -0.0 405,306 - Rru_A0333 0.63 -0.0 405,306 - Rru_A0333 0.63 -0.0 405,306 - Rru_A0333 0.63 -0.0 405,306 - Rru_A0333 0.63 -0.0 405,306 - Rru_A0333 0.63 -0.0 405,366 - Rru_A0333 0.76 -0.0 405,384 - Rru_A0333 0.80 -0.0 405,390 + Rru_A0333 0.81 -0.0 405,391 - Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -1.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -2.5 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -2.5 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,393 - Rru_A0333 0.82 -0.0 405,393 - Rru_A0333 0.82 -0.0 405,393 - Rru_A0333 0.82 -0.0 405,393 - Rru_A0333 0.82 -0.0 405,393 - Rru_A0333 0.82 -0.0 405,393 - Rru_A0333 0.82 -0.0 405,393 - Rru_A0333 0.82 -3.6 405,608 - -2.6 405,609 + -0.0 405,879 + -0.0 405,879 + -1.6 405,880 - -0.0 405,936 - -2.3 406,280 + Rru_A0334 0.34 -0.0 406,280 + Rru_A0334 0.34 -0.0 406,280 + Rru_A0334 0.34 -0.0 406,280 + Rru_A0334 0.34 -0.0 406,281 - Rru_A0334 0.34 -0.0 406,281 - Rru_A0334 0.34 -2.8 406,281 - Rru_A0334 0.34 -0.0 406,319 + Rru_A0334 0.38 -0.0 406,319 + Rru_A0334 0.38 -0.0 406,320 - Rru_A0334 0.38 -0.0
Or see this region's nucleotide sequence